We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTfap2c
ModelAP2C_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusnhnbnSCCYCAGGShnn
Best auROC (human)0.954
Best auROC (mouse)0.962
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)6
Aligned words493
TF familyAP-2 {1.3.1}
TF subfamilyAP-2gamma {1.3.1.0.3}
MGIMGI:106032
EntrezGeneGeneID:21420
(SSTAR profile)
UniProt IDAP2C_MOUSE
UniProt ACQ61312
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.94256
0.0005 8.35531
0.0001 13.65596
GTEx tissue expression atlas Tfap2c expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0131.035.018.018.034.082.012.054.033.059.014.017.08.043.011.023.0
0241.024.035.06.074.074.022.049.013.07.019.016.013.037.035.027.0
0319.037.036.049.024.050.09.059.015.039.026.031.07.032.019.040.0
043.015.032.015.062.030.030.036.013.033.029.015.038.025.082.034.0
055.020.087.04.07.026.070.00.05.093.072.03.04.025.067.04.0
060.021.00.00.00.0164.00.00.00.0293.01.02.00.011.00.00.0
070.00.00.00.00.0408.00.081.00.01.00.00.00.01.00.01.0
080.00.00.00.02.0175.039.0194.00.00.00.00.00.051.013.018.0
091.01.00.00.014.0210.00.02.00.052.00.00.015.0197.00.00.0
1029.00.01.00.0334.015.0108.03.00.00.00.00.02.00.00.00.0
118.00.0355.02.01.00.014.00.03.00.0106.00.00.00.03.00.0
121.00.011.00.00.00.00.00.00.01.0477.00.00.00.02.00.0
130.01.00.00.00.01.00.00.011.0227.0247.05.00.00.00.00.0
141.08.01.01.077.044.048.060.045.0150.026.026.01.03.01.00.0
1539.020.049.016.097.043.011.054.026.025.016.09.031.019.023.014.0
1631.046.064.052.012.036.017.042.010.041.030.018.010.022.037.024.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.0080.128-0.527-0.5270.0990.973-0.9220.5580.070.646-0.772-0.583-1.3120.332-1.006-0.286
020.285-0.2440.128-1.5840.8710.871-0.330.461-0.844-1.439-0.474-0.642-0.8440.1830.128-0.128
03-0.4740.1830.1560.461-0.2440.481-1.1990.646-0.7050.235-0.1660.008-1.4390.039-0.4740.26
04-2.218-0.7050.039-0.7050.695-0.024-0.0240.156-0.8440.07-0.058-0.7050.209-0.2040.9730.099
05-1.754-0.4231.032-1.96-1.439-0.1660.816-4.387-1.7541.0980.844-2.218-1.96-0.2040.772-1.96
06-4.387-0.376-4.387-4.387-4.3871.664-4.387-4.387-4.3872.243-3.111-2.568-4.387-1.006-4.387-4.387
07-4.387-4.387-4.387-4.387-4.3872.574-4.3870.961-4.387-3.111-4.387-4.387-4.387-3.111-4.387-3.111
08-4.387-4.387-4.387-4.387-2.5681.7290.2351.831-4.387-4.387-4.387-4.387-4.3870.501-0.844-0.527
09-3.111-3.111-4.387-4.387-0.7721.911-4.387-2.568-4.3870.52-4.387-4.387-0.7051.847-4.387-4.387
10-0.058-4.387-3.111-4.3872.374-0.7051.247-2.218-4.387-4.387-4.387-4.387-2.568-4.387-4.387-4.387
11-1.312-4.3872.435-2.568-3.111-4.387-0.772-4.387-2.218-4.3871.229-4.387-4.387-4.387-2.218-4.387
12-3.111-4.387-1.006-4.387-4.387-4.387-4.387-4.387-4.387-3.1112.73-4.387-4.387-4.387-2.568-4.387
13-4.387-3.111-4.387-4.387-4.387-3.111-4.387-4.387-1.0061.9882.073-1.754-4.387-4.387-4.387-4.387
14-3.111-1.312-3.111-3.1110.910.3550.4410.6620.3771.575-0.166-0.166-3.111-2.218-3.111-4.387
150.235-0.4230.461-0.6421.140.332-1.0060.558-0.166-0.204-0.642-1.1990.008-0.474-0.286-0.772
160.0080.3990.7270.52-0.9220.156-0.5830.308-1.0980.285-0.024-0.527-1.098-0.330.183-0.244