COT2_MOUSE.H11DI.0.A motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

Model

COT2_MOUSE.H11DI.0.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv10

Model length

19

Quality

A

Motif rank

0

Consensus

nnddnnnhhvAGGTCAdvn

Best auROC (human)

0.95

Best auROC (mouse)

0.874

Peak sets in benchmark (human)

28

Peak sets in benchmark (mouse)

3

Aligned words

501

TF family

RXR-related receptors (NR2) {2.1.3}

TF subfamily

COUP-like receptors (NR2F) {2.1.3.5}

MGI

EntrezGene

GeneID:11819
(SSTAR profile)

UniProt ID

UniProt AC

P43135
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	10.866810000000001
0.0005	12.79381
0.0001	16.383560000000003

GTEx tissue expression atlas

Nr2f2 expression

Motifs in JASPAR

MA1111.1 (NR2F2; Homo sapiens)

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	45.222	19.877	21.67	20.122	64.444	11.544	1.027	43.412	31.767	25.349	39.2	32.982	34.372	26.162	43.843	39.008
02	63.22	21.379	68.076	23.13	51.489	8.931	7.731	14.781	32.12	12.296	42.914	18.41	32.775	16.804	54.529	31.416
03	80.841	13.722	62.58	22.461	40.487	6.188	2.868	9.867	50.039	30.0	72.617	20.594	29.367	9.8	24.986	23.585
04	62.789	13.813	79.702	44.43	21.399	14.147	2.124	22.038	42.69	30.799	74.225	15.335	8.625	26.837	16.728	24.317
05	24.992	32.756	50.778	26.978	37.106	25.639	3.331	19.521	36.319	10.504	91.485	34.471	24.004	16.123	29.43	36.565
06	21.669	34.908	33.33	32.513	17.001	26.355	3.105	38.56	37.319	40.846	27.496	69.363	8.226	36.16	29.006	44.143
07	23.745	24.995	22.569	12.905	37.133	58.419	4.904	37.813	21.454	33.333	16.636	21.514	24.01	91.949	35.534	33.086
08	55.037	17.779	18.664	14.861	145.166	23.956	7.99	31.585	48.006	19.768	5.324	6.546	42.995	9.601	19.716	33.006
09	135.56	50.889	92.283	12.472	44.499	13.488	2.52	10.597	19.55	10.084	21.149	0.911	28.437	10.015	35.021	12.526
10	192.931	0.0	35.115	0.0	78.616	0.0	3.055	2.804	129.945	0.0	21.027	0.0	17.121	0.0	19.384	0.0
11	1.813	0.0	398.936	17.864	0.0	0.0	0.0	0.0	0.0	0.0	78.582	0.0	0.0	0.0	2.804	0.0
12	0.0	0.0	1.813	0.0	0.0	0.0	0.0	0.0	5.019	0.0	434.938	40.366	0.0	0.0	15.275	2.589
13	0.0	0.0	0.0	5.019	0.0	0.0	0.0	0.0	1.072	5.892	68.504	376.558	0.0	0.783	1.002	41.17
14	0.0	1.072	0.0	0.0	0.0	6.675	0.0	0.0	0.0	65.631	0.808	3.067	0.0	380.088	23.762	18.897
15	0.0	0.0	0.0	0.0	449.095	0.0	3.539	0.832	22.448	0.0	0.0	2.122	19.392	0.0	2.572	0.0
16	138.134	71.062	204.395	77.343	0.0	0.0	0.0	0.0	3.786	0.832	0.0	1.493	0.832	0.0	0.944	1.178
17	57.492	23.731	51.469	10.06	40.617	18.28	3.107	9.89	74.97	33.452	75.613	21.304	4.931	27.674	28.389	19.02
18	35.987	12.662	78.881	50.479	32.299	32.46	3.706	34.673	55.09	21.185	48.127	34.177	6.838	6.467	24.433	22.536

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.366	-0.445	-0.361	-0.433	0.717	-0.975	-3.107	0.325	0.016	-0.206	0.224	0.053	0.094	-0.175	0.335	0.219
02	0.698	-0.374	0.772	-0.297	0.495	-1.222	-1.36	-0.735	0.027	-0.914	0.314	-0.521	0.047	-0.61	0.551	0.005
03	0.943	-0.807	0.688	-0.325	0.256	-1.571	-2.274	-1.127	0.466	-0.04	0.836	-0.411	-0.061	-1.133	-0.221	-0.277
04	0.692	-0.801	0.929	0.348	-0.373	-0.778	-2.533	-0.344	0.309	-0.014	0.858	-0.699	-1.256	-0.15	-0.614	-0.247
05	-0.22	0.046	0.481	-0.145	0.17	-0.195	-2.141	-0.463	0.149	-1.066	1.066	0.097	-0.26	-0.65	-0.059	0.155
06	-0.361	0.109	0.064	0.039	-0.598	-0.168	-2.203	0.208	0.175	0.265	-0.126	0.791	-1.301	0.144	-0.074	0.342
07	-0.271	-0.22	-0.321	-0.867	0.171	0.62	-1.788	0.189	-0.371	0.064	-0.62	-0.368	-0.26	1.071	0.127	0.056
08	0.561	-0.555	-0.507	-0.73	1.526	-0.262	-1.329	0.011	0.425	-0.451	-1.712	-1.518	0.316	-1.153	-0.453	0.054
09	1.458	0.483	1.075	-0.9	0.35	-0.824	-2.387	-1.058	-0.462	-1.106	-0.385	-3.192	-0.093	-1.112	0.113	-0.896
10	1.81	-4.4	0.115	-4.4	0.915	-4.4	-2.218	-2.293	1.416	-4.4	-0.39	-4.4	-0.592	-4.4	-0.47	-4.4
11	-2.665	-4.4	2.535	-0.55	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	0.915	-4.4	-4.4	-4.4	-2.293	-4.4
12	-4.4	-4.4	-2.665	-4.4	-4.4	-4.4	-4.4	-4.4	-1.767	-4.4	2.622	0.253	-4.4	-4.4	-0.703	-2.363
13	-4.4	-4.4	-4.4	-1.767	-4.4	-4.4	-4.4	-4.4	-3.076	-1.617	0.778	2.478	-4.4	-3.296	-3.125	0.273
14	-4.4	-3.076	-4.4	-4.4	-4.4	-1.499	-4.4	-4.4	-4.4	0.736	-3.275	-2.214	-4.4	2.487	-0.27	-0.495
15	-4.4	-4.4	-4.4	-4.4	2.654	-4.4	-2.086	-3.255	-0.326	-4.4	-4.4	-2.534	-0.47	-4.4	-2.369	-4.4
16	1.477	0.815	1.868	0.899	-4.4	-4.4	-4.4	-4.4	-2.025	-3.255	-4.4	-2.822	-3.255	-4.4	-3.167	-3.006
17	0.604	-0.271	0.494	-1.108	0.259	-0.528	-2.203	-1.124	0.868	0.067	0.876	-0.377	-1.783	-0.12	-0.095	-0.489
18	0.14	-0.886	0.918	0.475	0.033	0.038	-2.045	0.103	0.562	-0.383	0.428	0.088	-1.477	-1.529	-0.243	-0.322