We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGabpa
ModelGABPA_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvvvSMGGAAGYRvnv
Best auROC (human)0.988
Best auROC (mouse)0.957
Peak sets in benchmark (human)92
Peak sets in benchmark (mouse)8
Aligned words503
TF familyEts-related factors {3.5.2}
TF subfamilyEts-like factors {3.5.2.1}
MGIMGI:95610
EntrezGeneGeneID:14390
(SSTAR profile)
UniProt IDGABPA_MOUSE
UniProt ACQ00422
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.567810000000001
0.0005 10.30826
0.0001 13.70966
GTEx tissue expression atlas Gabpa expression
Motifs in JASPAR
MA0062.1 (GABPA; Homo sapiens)
MA0062.2 (Gabpa; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.010.059.019.040.041.031.026.096.033.047.020.013.06.022.011.0
0275.037.050.013.029.014.038.09.074.011.064.010.023.013.027.013.0
0311.0103.077.010.03.061.03.08.019.0111.042.07.010.023.010.02.0
0421.015.04.03.055.0227.04.012.043.083.01.05.011.07.03.06.0
056.00.0120.04.019.05.0303.05.01.00.011.00.05.00.020.01.0
061.02.028.00.00.00.04.01.03.03.0446.02.00.00.09.01.0
074.00.00.00.05.00.00.00.0480.01.04.02.04.00.00.00.0
08480.01.03.09.01.00.00.00.04.00.00.00.02.00.00.00.0
0991.08.0382.06.01.00.00.00.00.00.03.00.04.01.04.00.0
107.019.014.056.00.02.00.07.036.061.035.0257.02.00.02.02.0
117.01.030.07.023.09.037.013.011.09.026.05.028.035.0225.034.0
1219.05.043.02.014.013.021.06.0100.061.0125.032.010.013.032.04.0
1336.057.033.017.024.039.019.010.068.064.055.034.06.018.012.08.0
1441.026.045.022.022.034.091.031.021.020.059.019.012.024.022.011.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-1.1140.63-0.490.2440.269-0.008-0.1811.1140.0540.404-0.439-0.86-1.6-0.346-1.022
020.8680.1670.465-0.86-0.074-0.7880.193-1.2150.855-1.0220.711-1.114-0.302-0.86-0.144-0.86
03-1.0221.1840.894-1.114-2.2340.663-2.234-1.328-0.491.2590.293-1.454-1.114-0.302-1.114-2.584
04-0.392-0.721-1.975-2.2340.561.972-1.975-0.9380.3160.969-3.126-1.77-1.022-1.454-2.234-1.6
05-1.6-4.41.336-1.975-0.49-1.772.261-1.77-3.126-4.4-1.022-4.4-1.77-4.4-0.439-3.126
06-3.126-2.584-0.108-4.4-4.4-4.4-1.975-3.126-2.234-2.2342.647-2.584-4.4-4.4-1.215-3.126
07-1.975-4.4-4.4-4.4-1.77-4.4-4.4-4.42.72-3.126-1.975-2.584-1.975-4.4-4.4-4.4
082.72-3.126-2.234-1.215-3.126-4.4-4.4-4.4-1.975-4.4-4.4-4.4-2.584-4.4-4.4-4.4
091.061-1.3282.492-1.6-3.126-4.4-4.4-4.4-4.4-4.4-2.234-4.4-1.975-3.126-1.975-4.4
10-1.454-0.49-0.7880.578-4.4-2.584-4.4-1.4540.140.6630.1122.096-2.584-4.4-2.584-2.584
11-1.454-3.126-0.04-1.454-0.302-1.2150.167-0.86-1.022-1.215-0.181-1.77-0.1080.1121.9630.083
12-0.49-1.770.316-2.584-0.788-0.86-0.392-1.61.1550.6631.3770.023-1.114-0.860.023-1.975
130.140.5950.054-0.599-0.260.219-0.49-1.1140.7710.7110.560.083-1.6-0.543-0.938-1.328
140.269-0.1810.361-0.346-0.3460.0831.061-0.008-0.392-0.4390.63-0.49-0.938-0.26-0.346-1.022