We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGata6
ModelGATA6_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusvWGATAASvn
Best auROC (human)0.963
Best auROC (mouse)0.97
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words503
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
MGIMGI:107516
EntrezGeneGeneID:14465
(SSTAR profile)
UniProt IDGATA6_MOUSE
UniProt ACQ61169
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.139724999999999
0.0005 11.983805
0.0001 15.862665
GTEx tissue expression atlas Gata6 expression
Motifs in JASPAR
MA1104.1 (GATA6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0162.03.01.012.075.09.01.071.0146.018.02.032.033.03.03.029.0
026.00.0310.00.02.00.031.00.00.00.07.00.01.00.0143.00.0
039.00.00.00.00.00.00.00.0487.00.04.00.00.00.00.00.0
047.02.014.0473.00.00.00.00.02.00.00.02.00.00.00.00.0
058.00.01.00.02.00.00.00.011.00.00.03.0432.04.010.029.0
06401.08.035.09.01.03.00.00.08.00.03.00.028.01.03.00.0
0744.056.0318.020.02.02.08.00.06.013.017.05.02.02.05.00.0
0812.015.023.04.023.022.027.01.0100.060.0171.017.03.05.015.02.0
0932.018.063.025.031.030.021.020.065.064.068.039.07.06.06.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.679-2.234-3.126-0.9380.868-1.215-3.1260.8141.532-0.543-2.5840.0230.054-2.234-2.234-0.074
02-1.6-4.42.283-4.4-2.584-4.4-0.008-4.4-4.4-4.4-1.454-4.4-3.126-4.41.511-4.4
03-1.215-4.4-4.4-4.4-4.4-4.4-4.4-4.42.735-4.4-1.975-4.4-4.4-4.4-4.4-4.4
04-1.454-2.584-0.7882.706-4.4-4.4-4.4-4.4-2.584-4.4-4.4-2.584-4.4-4.4-4.4-4.4
05-1.328-4.4-3.126-4.4-2.584-4.4-4.4-4.4-1.022-4.4-4.4-2.2342.615-1.975-1.114-0.074
062.541-1.3280.112-1.215-3.126-2.234-4.4-4.4-1.328-4.4-2.234-4.4-0.108-3.126-2.234-4.4
070.3390.5782.309-0.439-2.584-2.584-1.328-4.4-1.6-0.86-0.599-1.77-2.584-2.584-1.77-4.4
08-0.938-0.721-0.302-1.975-0.302-0.346-0.144-3.1261.1550.6461.69-0.599-2.234-1.77-0.721-2.584
090.023-0.5430.695-0.22-0.008-0.04-0.392-0.4390.7260.7110.7710.219-1.454-1.6-1.6-1.77