We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorGli1
ModelGLI1_MOUSE.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
B
Motif rank
0
ConsensusnvnnbSTGGGTGGYChn
Best auROC (human)0.671
Best auROC (mouse)0.953
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)3
Aligned words501
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyGLI-like factors {2.3.3.1}
MGIMGI:95727
EntrezGeneGeneID:14632
(SSTAR profile)
UniProt IDGLI1_MOUSE
UniProt ACP47806
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.470459999999999
0.0005 8.63216
0.0001 13.277910000000002
GTEx tissue expression atlas Gli1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.054.030.04.014.062.014.04.020.094.018.014.09.076.049.011.0
0218.021.021.010.078.048.046.0114.025.036.020.030.02.013.010.08.0
0339.033.031.020.028.034.016.040.027.032.025.013.023.060.043.036.0
0417.045.026.029.022.056.010.071.013.044.022.036.04.051.028.026.0
051.026.027.02.010.0107.046.033.02.045.036.03.01.050.0105.06.0
063.00.00.011.025.028.02.0173.05.023.06.0180.00.03.01.040.0
072.04.022.05.05.02.037.010.02.02.03.02.09.011.0375.09.0
082.00.016.00.00.01.014.04.02.01.0338.096.00.02.020.04.0
091.01.02.00.00.00.04.00.00.06.0381.01.00.06.098.00.0
100.00.00.01.01.00.02.010.035.013.06.0431.00.00.00.01.0
112.01.033.00.00.00.013.00.00.01.07.00.02.03.0438.00.0
120.01.02.01.01.00.03.01.09.04.0464.014.00.00.00.00.0
130.04.02.04.01.02.01.01.08.0106.058.0297.00.06.05.05.0
142.03.03.01.07.096.07.08.05.057.03.01.013.0278.011.05.0
157.07.04.09.034.0166.023.0211.07.07.06.04.01.06.04.04.0
1616.06.020.07.055.046.023.062.05.016.010.06.028.076.081.043.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.1440.542-0.04-1.975-0.7880.679-0.788-1.975-0.4391.093-0.543-0.788-1.2150.8810.445-1.022
02-0.543-0.392-0.392-1.1140.9070.4250.3831.285-0.220.14-0.439-0.04-2.584-0.86-1.114-1.328
030.2190.054-0.008-0.439-0.1080.083-0.6580.244-0.1440.023-0.22-0.86-0.3020.6460.3160.14
04-0.5990.361-0.181-0.074-0.3460.578-1.1140.814-0.860.339-0.3460.14-1.9750.485-0.108-0.181
05-3.126-0.181-0.144-2.584-1.1141.2220.3830.054-2.5840.3610.14-2.234-3.1260.4651.203-1.6
06-2.234-4.4-4.4-1.022-0.22-0.108-2.5841.701-1.77-0.302-1.61.741-4.4-2.234-3.1260.244
07-2.584-1.975-0.346-1.77-1.77-2.5840.167-1.114-2.584-2.584-2.234-2.584-1.215-1.0222.474-1.215
08-2.584-4.4-0.658-4.4-4.4-3.126-0.788-1.975-2.584-3.1262.371.114-4.4-2.584-0.439-1.975
09-3.126-3.126-2.584-4.4-4.4-4.4-1.975-4.4-4.4-1.62.489-3.126-4.4-1.61.135-4.4
10-4.4-4.4-4.4-3.126-3.126-4.4-2.584-1.1140.112-0.86-1.62.613-4.4-4.4-4.4-3.126
11-2.584-3.1260.054-4.4-4.4-4.4-0.86-4.4-4.4-3.126-1.454-4.4-2.584-2.2342.629-4.4
12-4.4-3.126-2.584-3.126-3.126-4.4-2.234-3.126-1.215-1.9752.686-0.788-4.4-4.4-4.4-4.4
13-4.4-1.975-2.584-1.975-3.126-2.584-3.126-3.126-1.3281.2130.6132.241-4.4-1.6-1.77-1.77
14-2.584-2.234-2.234-3.126-1.4541.114-1.454-1.328-1.770.595-2.234-3.126-0.862.175-1.022-1.77
15-1.454-1.454-1.975-1.2150.0831.66-0.3021.899-1.454-1.454-1.6-1.975-3.126-1.6-1.975-1.975
16-0.658-1.6-0.439-1.4540.560.383-0.3020.679-1.77-0.658-1.114-1.6-0.1080.8810.9450.316