We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorLhx6
ModelLHX6_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusnbYTGATTRvn
Best auROC (human)0.337
Best auROC (mouse)0.932
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words445
TF familyHD-LIM factors {3.1.5}
TF subfamilyLhx-6-like factors {3.1.5.5}
MGIMGI:1306803
EntrezGeneGeneID:16874
(SSTAR profile)
UniProt IDLHX6_MOUSE
UniProt ACQ9R1R0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.7721
0.0005 13.00939
0.0001 16.4803
GTEx tissue expression atlas Lhx6 expression
Motifs in JASPAR
MA0658.1 (LHX6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.025.036.032.021.016.012.059.012.031.021.039.08.028.059.035.0
021.033.013.04.05.047.06.042.07.093.07.021.07.079.024.055.0
030.00.00.020.02.00.00.0250.00.00.00.050.00.00.01.0121.0
040.00.02.00.00.00.00.00.00.00.01.00.048.01.0392.00.0
0548.00.00.00.01.00.00.00.0393.00.02.00.00.00.00.00.0
060.04.01.0437.00.00.00.00.00.00.00.02.00.00.00.00.0
070.00.00.00.00.00.00.04.00.00.00.01.01.00.017.0421.0
080.00.01.00.00.00.00.00.016.00.01.00.0242.00.0175.09.0
0961.077.0103.017.00.00.00.00.023.0100.039.015.03.04.02.00.0
1015.028.023.021.078.031.015.057.032.054.033.025.08.02.08.014.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.997-0.1030.2570.141-0.274-0.541-0.8210.747-0.8210.109-0.2740.336-1.2110.0090.7470.229
02-3.0140.171-0.743-1.86-1.6540.521-1.4840.41-1.3381.2-1.338-0.274-1.3381.037-0.1430.677
03-4.302-4.302-4.302-0.322-2.469-4.302-4.3022.186-4.302-4.302-4.3020.583-4.302-4.302-3.0141.462
04-4.302-4.302-2.469-4.302-4.302-4.302-4.302-4.302-4.302-4.302-3.014-4.3020.542-3.0142.635-4.302
050.542-4.302-4.302-4.302-3.014-4.302-4.302-4.3022.638-4.302-2.469-4.302-4.302-4.302-4.302-4.302
06-4.302-1.86-3.0142.744-4.302-4.302-4.302-4.302-4.302-4.302-4.302-2.469-4.302-4.302-4.302-4.302
07-4.302-4.302-4.302-4.302-4.302-4.302-4.302-1.86-4.302-4.302-4.302-3.014-3.014-4.302-0.4812.707
08-4.302-4.302-3.014-4.302-4.302-4.302-4.302-4.302-0.541-4.302-3.014-4.3022.154-4.3021.83-1.098
090.781.0121.302-0.481-4.302-4.302-4.302-4.302-0.1851.2720.336-0.604-2.119-1.86-2.469-4.302
10-0.6040.009-0.185-0.2741.0250.109-0.6040.7130.1410.6590.171-0.103-1.211-2.469-1.211-0.671