We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMef2d
ModelMEF2D_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnndKCTATTTWTAKv
Best auROC (human)0.808
Best auROC (mouse)0.973
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words373
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
MGIMGI:99533
EntrezGeneGeneID:17261
(SSTAR profile)
UniProt IDMEF2D_MOUSE
UniProt ACQ63943
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.294160000000002
0.0005 11.225560000000002
0.0001 15.24426
GTEx tissue expression atlas Mef2d expression
Motifs in JASPAR
MA0773.1 (MEF2D; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0121.015.035.015.029.016.011.021.016.028.035.028.011.012.065.015.0
0228.02.028.019.023.06.09.033.055.05.046.040.010.04.034.031.0
036.08.076.026.01.03.03.010.010.05.074.028.012.013.047.051.0
040.024.05.00.00.028.01.00.04.0149.013.034.00.0101.01.013.0
050.00.00.04.01.09.00.0292.00.02.00.018.00.01.01.045.0
061.00.00.00.011.00.01.00.01.00.00.00.0331.04.017.07.0
0738.00.00.0306.00.02.00.02.04.01.00.013.02.00.00.05.0
0819.00.05.020.02.00.00.01.00.00.00.00.032.00.05.0289.0
0913.00.00.040.00.00.00.00.02.03.01.04.019.014.02.0275.0
1029.01.00.04.02.09.00.06.01.01.00.01.0106.031.04.0178.0
1111.01.03.0123.05.06.02.029.00.00.00.04.021.02.017.0149.0
1222.01.014.00.08.00.01.00.07.00.015.00.0237.02.064.02.0
1328.03.0222.021.02.00.00.01.06.03.068.017.00.01.01.00.0
149.020.04.03.01.02.00.04.094.0128.046.023.06.025.05.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.103-0.4320.401-0.4320.215-0.369-0.734-0.103-0.3690.1810.4010.181-0.734-0.6491.015-0.432
020.181-2.3020.181-0.201-0.013-1.313-0.9270.3430.849-1.4840.6720.533-0.826-1.690.3720.281
03-1.313-1.041.1710.107-2.85-1.95-1.95-0.826-0.826-1.4841.1440.181-0.649-0.5720.6930.774
04-4.1590.029-1.484-4.159-4.1590.181-2.85-4.159-1.691.842-0.5720.372-4.1591.454-2.85-0.572
05-4.159-4.159-4.159-1.69-2.85-0.927-4.1592.513-4.159-2.302-4.159-0.254-4.159-2.85-2.850.65
06-2.85-4.159-4.159-4.159-0.734-4.159-2.85-4.159-2.85-4.159-4.159-4.1592.638-1.69-0.31-1.167
070.483-4.159-4.1592.56-4.159-2.302-4.159-2.302-1.69-2.85-4.159-0.572-2.302-4.159-4.159-1.484
08-0.201-4.159-1.484-0.151-2.302-4.159-4.159-2.85-4.159-4.159-4.159-4.1590.312-4.159-1.4842.503
09-0.572-4.159-4.1590.533-4.159-4.159-4.159-4.159-2.302-1.95-2.85-1.69-0.201-0.5-2.3022.453
100.215-2.85-4.159-1.69-2.302-0.927-4.159-1.313-2.85-2.85-4.159-2.851.5020.281-1.692.019
11-0.734-2.85-1.951.65-1.484-1.313-2.3020.215-4.159-4.159-4.159-1.69-0.103-2.302-0.311.842
12-0.057-2.85-0.5-4.159-1.04-4.159-2.85-4.159-1.167-4.159-0.432-4.1592.305-2.3021.0-2.302
130.181-1.952.24-0.103-2.302-4.159-4.159-2.85-1.313-1.951.06-0.31-4.159-2.85-2.85-4.159
14-0.927-0.151-1.69-1.95-2.85-2.302-4.159-1.691.3821.690.672-0.013-1.3130.069-1.484-1.95