We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorOtx2
ModelOTX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusndddRGGATTAdvn
Best auROC (human)0.879
Best auROC (mouse)0.92
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)18
Aligned words500
TF familyPaired-related HD factors {3.1.3}
TF subfamilyOTX {3.1.3.17}
MGIMGI:97451
EntrezGene
UniProt IDOTX2_MOUSE
UniProt ACP80206
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.40016
0.0005 12.482210000000002
0.0001 16.108365
GTEx tissue expression atlas Otx2 expression
Motifs in JASPAR
MA0712.1 (OTX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.010.053.012.043.011.012.021.023.031.044.017.071.018.058.033.0
02100.015.048.017.031.07.09.023.050.038.057.022.021.012.032.018.0
0385.011.086.020.021.08.09.034.056.017.059.014.05.017.042.016.0
0471.08.084.04.031.05.011.06.068.017.0101.010.020.06.053.05.0
0523.02.0165.00.019.01.015.01.063.04.0179.03.03.00.022.00.0
060.01.0106.01.00.01.06.00.011.00.0370.00.00.00.04.00.0
079.02.00.00.02.00.00.00.0409.068.04.05.01.00.00.00.0
080.01.00.0420.00.00.00.070.00.00.00.04.00.00.00.05.0
090.00.00.00.00.00.00.01.00.00.00.00.00.00.00.0499.0
100.00.00.00.00.00.00.00.00.00.00.00.0412.02.05.081.0
11162.039.0173.038.01.01.00.00.01.00.03.01.034.04.035.08.0
1263.053.073.09.020.018.01.05.033.083.064.031.01.027.014.05.0
1329.018.061.09.078.032.09.062.048.035.041.028.07.07.021.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.316-1.1140.523-0.9380.316-1.022-0.938-0.392-0.302-0.0080.339-0.5990.814-0.5430.6130.054
021.155-0.7210.425-0.599-0.008-1.454-1.215-0.3020.4650.1930.595-0.346-0.392-0.9380.023-0.543
030.993-1.0221.004-0.439-0.392-1.328-1.2150.0830.578-0.5990.63-0.788-1.77-0.5990.293-0.658
040.814-1.3280.981-1.975-0.008-1.77-1.022-1.60.771-0.5991.165-1.114-0.439-1.60.523-1.77
05-0.302-2.5841.654-4.4-0.49-3.126-0.721-3.1260.695-1.9751.735-2.234-2.234-4.4-0.346-4.4
06-4.4-3.1261.213-3.126-4.4-3.126-1.6-4.4-1.022-4.42.46-4.4-4.4-4.4-1.975-4.4
07-1.215-2.584-4.4-4.4-2.584-4.4-4.4-4.42.560.771-1.975-1.77-3.126-4.4-4.4-4.4
08-4.4-3.126-4.42.587-4.4-4.4-4.40.8-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.77
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759
10-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.568-2.584-1.770.945
111.6360.2191.7010.193-3.126-3.126-4.4-4.4-3.126-4.4-2.234-3.1260.083-1.9750.112-1.328
120.6950.5230.841-1.215-0.439-0.543-3.126-1.770.0540.9690.711-0.008-3.126-0.144-0.788-1.77
13-0.074-0.5430.663-1.2150.9070.023-1.2150.6790.4250.1120.269-0.108-1.454-1.454-0.392-0.721