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Model info
Transcription factorPdx1
ModelPDX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTGAYWRAKKdn
Best auROC (human)0.949
Best auROC (mouse)0.905
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyPDX {3.1.1.15}
MGIMGI:102851
EntrezGeneGeneID:18609
(SSTAR profile)
UniProt IDPDX1_MOUSE
UniProt ACP52946
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.453009999999999
0.0005 12.308625
0.0001 16.02715
GTEx tissue expression atlas Pdx1 expression
Motifs in JASPAR
MA0132.1 (Pdx1; Mus musculus)
MA0132.2 (PDX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0145.01.08.0146.06.00.01.047.019.01.01.0112.07.00.01.0105.0
020.00.075.02.00.00.02.00.00.00.010.01.015.01.0389.05.0
0315.00.00.00.01.00.00.00.0469.05.02.00.08.00.00.00.0
0418.069.021.0385.00.00.00.05.00.01.00.01.00.00.00.00.0
053.00.00.015.039.01.06.024.01.01.03.016.070.02.043.0276.0
0662.02.049.00.01.01.02.00.00.02.050.00.0106.08.0214.03.0
07165.00.03.01.013.00.00.00.0312.00.02.01.03.00.00.00.0
0829.028.055.0381.00.00.00.00.00.02.00.03.00.00.00.02.0
095.07.012.05.05.00.014.011.02.08.013.032.017.019.0264.086.0
109.00.017.03.020.01.06.07.0115.032.0128.028.034.07.084.09.0
1121.062.057.038.013.010.04.013.049.066.077.043.02.014.026.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.361-3.126-1.3281.532-1.6-4.4-3.1260.404-0.49-3.126-3.1261.268-1.454-4.4-3.1261.203
02-4.4-4.40.868-2.584-4.4-4.4-2.584-4.4-4.4-4.4-1.114-3.126-0.721-3.1262.51-1.77
03-0.721-4.4-4.4-4.4-3.126-4.4-4.4-4.42.697-1.77-2.584-4.4-1.328-4.4-4.4-4.4
04-0.5430.785-0.3922.5-4.4-4.4-4.4-1.77-4.4-3.126-4.4-3.126-4.4-4.4-4.4-4.4
05-2.234-4.4-4.4-0.7210.219-3.126-1.6-0.26-3.126-3.126-2.234-0.6580.8-2.5840.3162.167
060.679-2.5840.445-4.4-3.126-3.126-2.584-4.4-4.4-2.5840.465-4.41.213-1.3281.913-2.234
071.654-4.4-2.234-3.126-0.86-4.4-4.4-4.42.29-4.4-2.584-3.126-2.234-4.4-4.4-4.4
08-0.074-0.1080.562.489-4.4-4.4-4.4-4.4-4.4-2.584-4.4-2.234-4.4-4.4-4.4-2.584
09-1.77-1.454-0.938-1.77-1.77-4.4-0.788-1.022-2.584-1.328-0.860.023-0.599-0.492.1231.004
10-1.215-4.4-0.599-2.234-0.439-3.126-1.6-1.4541.2940.0231.401-0.1080.083-1.4540.981-1.215
11-0.3920.6790.5950.193-0.86-1.114-1.975-0.860.4450.7410.8940.316-2.584-0.788-0.181-1.77