We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorPdx1
ModelPDX1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdTGAYWRAKKdn
Best auROC (human)0.949
Best auROC (mouse)0.905
Peak sets in benchmark (human)10
Peak sets in benchmark (mouse)4
Aligned words503
TF familyHOX-related factors {3.1.1}
TF subfamilyPDX {3.1.1.15}
MGIMGI:102851
EntrezGeneGeneID:18609
(SSTAR profile)
UniProt IDPDX1_MOUSE
UniProt ACP52946
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.453009999999999
0.0005 12.308625
0.0001 16.02715
GTEx tissue expression atlas Pdx1 expression
Motifs in JASPAR
MA0132.1 (Pdx1; Mus musculus)
MA0132.2 (PDX1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0145.01.08.0146.06.00.01.047.019.01.01.0112.07.00.01.0105.0
020.00.075.02.00.00.02.00.00.00.010.01.015.01.0389.05.0
0315.00.00.00.01.00.00.00.0469.05.02.00.08.00.00.00.0
0418.069.021.0385.00.00.00.05.00.01.00.01.00.00.00.00.0
053.00.00.015.039.01.06.024.01.01.03.016.070.02.043.0276.0
0662.02.049.00.01.01.02.00.00.02.050.00.0106.08.0214.03.0
07165.00.03.01.013.00.00.00.0312.00.02.01.03.00.00.00.0
0829.028.055.0381.00.00.00.00.00.02.00.03.00.00.00.02.0
095.07.012.05.05.00.014.011.02.08.013.032.017.019.0264.086.0
109.00.017.03.020.01.06.07.0115.032.0128.028.034.07.084.09.0
1121.062.057.038.013.010.04.013.049.066.077.043.02.014.026.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.361-3.126-1.3281.532-1.6-4.4-3.1260.404-0.49-3.126-3.1261.268-1.454-4.4-3.1261.203
02-4.4-4.40.868-2.584-4.4-4.4-2.584-4.4-4.4-4.4-1.114-3.126-0.721-3.1262.51-1.77
03-0.721-4.4-4.4-4.4-3.126-4.4-4.4-4.42.697-1.77-2.584-4.4-1.328-4.4-4.4-4.4
04-0.5430.785-0.3922.5-4.4-4.4-4.4-1.77-4.4-3.126-4.4-3.126-4.4-4.4-4.4-4.4
05-2.234-4.4-4.4-0.7210.219-3.126-1.6-0.26-3.126-3.126-2.234-0.6580.8-2.5840.3162.167
060.679-2.5840.445-4.4-3.126-3.126-2.584-4.4-4.4-2.5840.465-4.41.213-1.3281.913-2.234
071.654-4.4-2.234-3.126-0.86-4.4-4.4-4.42.29-4.4-2.584-3.126-2.234-4.4-4.4-4.4
08-0.074-0.1080.562.489-4.4-4.4-4.4-4.4-4.4-2.584-4.4-2.234-4.4-4.4-4.4-2.584
09-1.77-1.454-0.938-1.77-1.77-4.4-0.788-1.022-2.584-1.328-0.860.023-0.599-0.492.1231.004
10-1.215-4.4-0.599-2.234-0.439-3.126-1.6-1.4541.2940.0231.401-0.1080.083-1.4540.981-1.215
11-0.3920.6790.5950.193-0.86-1.114-1.975-0.860.4450.7410.8940.316-2.584-0.788-0.181-1.77