We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRxrg
ModelRXRG_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length25
Quality
A
Motif rank
0
ConsensusdvddvdbnnnRRGKKSARGGYYRnv
Best auROC (human)
Best auROC (mouse)0.986
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)7
Aligned words395
TF familyRXR-related receptors (NR2) {2.1.3}
TF subfamilyRetinoid X receptors (NR2B) {2.1.3.1}
MGIMGI:98216
EntrezGeneGeneID:20183
(SSTAR profile)
UniProt IDRXRG_MOUSE
UniProt ACP28705
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.58811
0.0005 10.40251
0.0001 14.31371
GTEx tissue expression atlas Rxrg expression
Motifs in JASPAR
MA0856.1 (RXRG; Homo sapiens)
MA1149.1 (RARA::RXRG; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.013.048.09.013.014.06.018.037.030.0107.019.010.09.032.010.0
0230.09.029.05.031.07.04.024.077.014.071.031.05.05.036.010.0
0344.012.071.016.014.04.02.015.038.09.063.030.016.023.016.015.0
0411.014.077.010.019.09.09.011.033.011.088.020.010.029.025.012.0
0527.011.023.012.033.010.08.012.065.015.090.029.06.010.028.09.0
0617.030.036.048.011.011.00.024.013.026.050.060.05.027.014.016.0
079.05.020.012.030.023.07.034.029.023.025.023.021.074.037.016.0
0817.015.045.012.073.033.09.010.019.012.037.021.05.037.030.013.0
0921.012.067.014.044.012.06.035.054.012.021.034.06.023.016.011.0
1036.04.073.012.045.04.06.04.038.04.065.03.016.07.064.07.0
1198.02.029.06.012.02.03.02.0130.05.069.04.08.01.011.06.0
129.012.0222.05.06.01.02.01.011.018.082.01.02.01.013.02.0
132.08.014.04.017.02.05.08.08.015.0137.0159.00.03.04.02.0
141.05.019.02.02.01.03.022.03.011.024.0122.03.00.014.0156.0
151.05.03.00.02.013.01.01.07.021.024.08.014.0251.028.09.0
1614.02.05.03.0269.04.06.011.036.05.08.07.07.05.04.02.0
17238.020.051.017.015.00.00.01.019.02.01.01.010.04.06.03.0
1817.03.0259.03.07.00.014.05.07.06.041.04.05.05.08.04.0
190.05.028.03.00.08.04.02.014.09.0290.09.00.04.010.02.0
200.04.03.07.04.02.00.020.037.068.029.0198.01.02.07.06.0
211.023.015.03.04.056.01.015.05.021.010.03.05.0176.022.028.0
226.00.03.06.0234.020.010.012.018.05.019.06.023.01.019.06.0
2335.037.0153.056.08.02.04.012.05.03.030.013.02.08.017.03.0
2411.012.024.03.010.029.00.011.034.068.081.021.04.040.023.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.61-0.610.675-0.966-0.61-0.538-1.352-0.2930.4170.211.473-0.24-0.864-0.9660.274-0.864
020.21-0.9660.176-1.5220.242-1.206-1.728-0.011.145-0.5381.0640.242-1.522-1.5220.39-0.864
030.589-0.6881.064-0.408-0.538-1.728-2.34-0.4710.444-0.9660.9450.21-0.408-0.052-0.408-0.471
04-0.772-0.5381.145-0.864-0.24-0.966-0.966-0.7720.304-0.7721.278-0.189-0.8640.1760.03-0.688
050.106-0.772-0.052-0.6880.304-0.864-1.079-0.6880.976-0.4711.30.176-1.352-0.8640.142-0.966
06-0.3490.210.390.675-0.772-0.772-4.191-0.01-0.610.0690.7160.897-1.5220.106-0.538-0.408
07-0.966-1.522-0.189-0.6880.21-0.052-1.2060.3340.176-0.0520.03-0.052-0.1421.1050.417-0.408
08-0.349-0.4710.611-0.6881.0920.304-0.966-0.864-0.24-0.6880.417-0.142-1.5220.4170.21-0.61
09-0.142-0.6881.007-0.5380.589-0.688-1.3520.3620.792-0.688-0.1420.334-1.352-0.052-0.408-0.772
100.39-1.7281.092-0.6880.611-1.728-1.352-1.7280.444-1.7280.976-1.988-0.408-1.2060.961-1.206
111.385-2.340.176-1.352-0.688-2.34-1.988-2.341.667-1.5221.036-1.728-1.079-2.887-0.772-1.352
12-0.966-0.6882.201-1.522-1.352-2.887-2.34-2.887-0.772-0.2931.208-2.887-2.34-2.887-0.61-2.34
13-2.34-1.079-0.538-1.728-0.349-2.34-1.522-1.079-1.079-0.4711.7191.868-4.191-1.988-1.728-2.34
14-2.887-1.522-0.24-2.34-2.34-2.887-1.988-0.096-1.988-0.772-0.011.603-1.988-4.191-0.5381.849
15-2.887-1.522-1.988-4.191-2.34-0.61-2.887-2.887-1.206-0.142-0.01-1.079-0.5382.3230.142-0.966
16-0.538-2.34-1.522-1.9882.392-1.728-1.352-0.7720.39-1.522-1.079-1.206-1.206-1.522-1.728-2.34
172.27-0.1890.735-0.349-0.471-4.191-4.191-2.887-0.24-2.34-2.887-2.887-0.864-1.728-1.352-1.988
18-0.349-1.9882.355-1.988-1.206-4.191-0.538-1.522-1.206-1.3520.519-1.728-1.522-1.522-1.079-1.728
19-4.191-1.5220.142-1.988-4.191-1.079-1.728-2.34-0.538-0.9662.468-0.966-4.191-1.728-0.864-2.34
20-4.191-1.728-1.988-1.206-1.728-2.34-4.191-0.1890.4171.0210.1762.086-2.887-2.34-1.206-1.352
21-2.887-0.052-0.471-1.988-1.7280.828-2.887-0.471-1.522-0.142-0.864-1.988-1.5221.969-0.0960.142
22-1.352-4.191-1.988-1.3522.253-0.189-0.864-0.688-0.293-1.522-0.24-1.352-0.052-2.887-0.24-1.352
230.3620.4171.8290.828-1.079-2.34-1.728-0.688-1.522-1.9880.21-0.61-2.34-1.079-0.349-1.988
24-0.772-0.688-0.01-1.988-0.8640.176-4.191-0.7720.3341.0211.195-0.142-1.7280.494-0.052-0.349