We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTbx20
ModelTBX20_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusnvSTGnTGACARvn
Best auROC (human)
Best auROC (mouse)0.91
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words468
TF familyTBX1-related factors {6.5.3}
TF subfamilyTBX20 {6.5.3.0.5}
MGIMGI:1888496
EntrezGeneGeneID:57246
(SSTAR profile)
UniProt IDTBX20_MOUSE
UniProt ACQ9ES03
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.531410000000001
0.0005 10.62846
0.0001 14.995815
GTEx tissue expression atlas Tbx20 expression
Motifs in JASPAR
MA0689.1 (TBX20; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0137.013.098.015.026.015.012.026.041.017.061.05.09.016.066.09.0
026.014.093.00.08.026.016.011.02.073.0145.017.02.012.037.04.0
031.01.00.016.018.015.00.092.024.024.02.0241.00.05.00.027.0
046.02.035.00.03.00.039.03.00.00.02.00.07.03.0364.02.0
055.03.05.03.02.03.00.00.0107.0123.087.0123.01.01.02.01.0
067.03.01.0104.04.02.01.0123.01.04.03.086.04.01.020.0102.0
070.00.016.00.01.00.09.00.03.00.022.00.07.01.0407.00.0
0810.01.00.00.01.00.00.00.0445.01.08.00.00.00.00.00.0
0966.0366.021.03.00.02.00.00.00.08.00.00.00.00.00.00.0
1061.00.02.03.0364.00.012.00.017.01.00.03.02.00.01.00.0
1163.09.0337.035.00.00.01.00.01.01.07.06.01.00.05.00.0
1210.019.033.03.04.02.03.01.052.0134.0135.029.09.07.016.09.0
1312.020.017.026.039.043.04.076.062.045.036.044.09.09.07.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.237-0.7911.204-0.651-0.112-0.651-0.868-0.1120.338-0.5290.732-1.701-1.146-0.5880.811-1.146
02-1.531-0.7191.152-4.342-1.258-0.112-0.588-0.952-2.5160.9111.595-0.529-2.516-0.8680.237-1.907
03-3.06-3.06-4.342-0.588-0.473-0.651-4.3421.141-0.191-0.191-2.5162.102-4.342-1.701-4.342-0.075
04-1.531-2.5160.182-4.342-2.166-4.3420.289-2.166-4.342-4.342-2.516-4.342-1.385-2.1662.514-2.516
05-1.701-2.166-1.701-2.166-2.516-2.166-4.342-4.3421.2921.4311.0861.431-3.06-3.06-2.516-3.06
06-1.385-2.166-3.061.263-1.907-2.516-3.061.431-3.06-1.907-2.1661.074-1.907-3.06-0.371.244
07-4.342-4.342-0.588-4.342-3.06-4.342-1.146-4.342-2.166-4.342-0.276-4.342-1.385-3.062.625-4.342
08-1.044-3.06-4.342-4.342-3.06-4.342-4.342-4.3422.714-3.06-1.258-4.342-4.342-4.342-4.342-4.342
090.8112.519-0.322-2.166-4.342-2.516-4.342-4.342-4.342-1.258-4.342-4.342-4.342-4.342-4.342-4.342
100.732-4.342-2.516-2.1662.514-4.342-0.868-4.342-0.529-3.06-4.342-2.166-2.516-4.342-3.06-4.342
110.765-1.1462.4370.182-4.342-4.342-3.06-4.342-3.06-3.06-1.385-1.531-3.06-4.342-1.701-4.342
12-1.044-0.420.123-2.166-1.907-2.516-2.166-3.060.5741.5161.523-0.004-1.146-1.385-0.588-1.146
13-0.868-0.37-0.529-0.1120.2890.385-1.9070.9510.7490.430.2090.408-1.146-1.146-1.385-0.529