We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTgif1
ModelTGIF1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnTGACAGSnvn
Best auROC (human)0.812
Best auROC (mouse)0.981
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words142
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyTGIF {3.1.4.6}
MGIMGI:1194497
EntrezGeneGeneID:21815
(SSTAR profile)
UniProt IDTGIF1_MOUSE
UniProt ACP70284
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.811495
0.0005 11.099765
0.0001 15.555825
GTEx tissue expression atlas Tgif1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.00.01.024.00.02.00.043.00.02.03.038.04.00.00.018.0
021.00.04.00.00.02.02.00.00.00.03.01.00.01.0122.00.0
031.00.00.00.02.00.01.00.0130.00.01.00.01.00.00.00.0
042.0132.00.00.00.00.00.00.00.02.00.00.00.00.00.00.0
051.01.00.00.0133.01.00.00.00.00.00.00.00.00.00.00.0
0611.05.0118.00.01.01.00.00.00.00.00.00.00.00.00.00.0
070.05.07.00.02.04.00.00.011.074.021.012.00.00.00.00.0
084.01.06.02.019.012.09.043.06.05.01.016.00.00.02.010.0
096.05.018.00.010.01.02.05.00.04.010.04.04.022.038.07.0
104.06.08.02.09.010.03.010.015.020.016.017.03.02.010.01.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.908-3.356-1.9081.015-3.356-1.34-3.3561.593-3.356-1.34-0.9791.47-0.715-3.356-3.3560.732
02-1.908-3.356-0.715-3.356-3.356-1.34-1.34-3.356-3.356-3.356-0.979-1.908-3.356-1.9082.631-3.356
03-1.908-3.356-3.356-3.356-1.34-3.356-1.908-3.3562.694-3.356-1.908-3.356-1.908-3.356-3.356-3.356
04-1.342.71-3.356-3.356-3.356-3.356-3.356-3.356-3.356-1.34-3.356-3.356-3.356-3.356-3.356-3.356
05-1.908-1.908-3.356-3.3562.717-1.908-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356
060.25-0.5072.598-3.356-1.908-1.908-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356-3.356
07-3.356-0.507-0.187-3.356-1.34-0.715-3.356-3.3560.252.1330.8830.335-3.356-3.356-3.356-3.356
08-0.715-1.908-0.334-1.340.7850.3350.0551.593-0.334-0.507-1.9080.616-3.356-3.356-1.340.157
09-0.334-0.5070.732-3.3560.157-1.908-1.34-0.507-3.356-0.7150.157-0.715-0.7150.9291.47-0.187
10-0.715-0.334-0.058-1.340.0550.157-0.9790.1570.5530.8350.6160.676-0.979-1.340.157-1.908