We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorVsx2
ModelVSX2_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusnhTAATTAGCYdn
Best auROC (human)
Best auROC (mouse)0.996
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)3
Aligned words524
TF familyPaired-related HD factors {3.1.3}
TF subfamilyVSX {3.1.3.28}
MGIMGI:88401
EntrezGeneGeneID:12677
(SSTAR profile)
UniProt IDVSX2_MOUSE
UniProt ACQ61412
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.5386050000000004
0.0005 6.21339
0.0001 12.447915
GTEx tissue expression atlas Vsx2 expression
Motifs in JASPAR
MA0726.1 (VSX2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.056.012.055.013.035.00.045.027.067.08.057.025.036.011.047.0
023.01.00.067.03.00.00.0191.00.00.01.030.01.00.00.0203.0
036.00.00.01.01.00.00.00.00.00.01.00.0481.04.05.01.0
04488.00.00.00.04.00.00.00.06.00.00.00.02.00.00.00.0
050.01.00.0499.00.00.00.00.00.00.00.00.00.00.00.00.0
060.00.00.00.00.00.00.01.00.00.00.00.00.00.02.0497.0
070.00.00.00.00.00.00.00.02.00.00.00.0490.00.08.00.0
082.00.0490.00.00.00.00.00.00.01.07.00.00.00.00.00.0
090.02.00.00.00.01.00.00.01.0479.06.011.00.00.00.00.0
100.00.00.01.012.0158.00.0312.00.04.00.02.00.02.00.09.0
113.00.03.06.040.030.06.088.00.00.00.00.075.044.081.0124.0
1258.016.019.025.018.024.07.025.025.019.032.014.061.090.041.026.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.60.578-0.9380.56-0.860.112-4.40.361-0.1440.756-1.3280.595-0.220.14-1.0220.404
02-2.234-3.126-4.40.756-2.234-4.4-4.41.8-4.4-4.4-3.126-0.04-3.126-4.4-4.41.861
03-1.6-4.4-4.4-3.126-3.126-4.4-4.4-4.4-4.4-4.4-3.126-4.42.722-1.975-1.77-3.126
042.737-4.4-4.4-4.4-1.975-4.4-4.4-4.4-1.6-4.4-4.4-4.4-2.584-4.4-4.4-4.4
05-4.4-3.126-4.42.759-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-4.4-2.5842.755
07-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-4.4-4.4-4.42.741-4.4-1.328-4.4
08-2.584-4.42.741-4.4-4.4-4.4-4.4-4.4-4.4-3.126-1.454-4.4-4.4-4.4-4.4-4.4
09-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-3.1262.718-1.6-1.022-4.4-4.4-4.4-4.4
10-4.4-4.4-4.4-3.126-0.9381.611-4.42.29-4.4-1.975-4.4-2.584-4.4-2.584-4.4-1.215
11-2.234-4.4-2.234-1.60.244-0.04-1.61.027-4.4-4.4-4.4-4.40.8680.3390.9451.369
120.613-0.658-0.49-0.22-0.543-0.26-1.454-0.22-0.22-0.490.023-0.7880.6631.050.269-0.181