Transcription factor | ATF4 (GeneCards) | ||||||||
Model | ATF4_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dddMTGATGCAAYn | ||||||||
Best auROC (human) | 0.998 | ||||||||
Best auROC (mouse) | 0.961 | ||||||||
Peak sets in benchmark (human) | 18 | ||||||||
Peak sets in benchmark (mouse) | 9 | ||||||||
Aligned words | 453 | ||||||||
TF family | ATF-4-related factors {1.1.6} | ||||||||
TF subfamily | ATF-4 {1.1.6.0.1} | ||||||||
HGNC | HGNC:786 | ||||||||
EntrezGene | GeneID:468 (SSTAR profile) | ||||||||
UniProt ID | ATF4_HUMAN | ||||||||
UniProt AC | P18848 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ATF4 expression | ||||||||
ReMap ChIP-seq dataset list | ATF4 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 85.0 | 7.0 | 74.0 | 24.0 | 28.0 | 3.0 | 7.0 | 17.0 | 32.0 | 11.0 | 28.0 | 8.0 | 26.0 | 11.0 | 65.0 | 27.0 |
02 | 46.0 | 27.0 | 71.0 | 27.0 | 9.0 | 10.0 | 5.0 | 8.0 | 40.0 | 32.0 | 78.0 | 24.0 | 13.0 | 7.0 | 33.0 | 23.0 |
03 | 53.0 | 22.0 | 32.0 | 1.0 | 58.0 | 16.0 | 2.0 | 0.0 | 90.0 | 74.0 | 22.0 | 1.0 | 34.0 | 42.0 | 6.0 | 0.0 |
04 | 0.0 | 4.0 | 0.0 | 231.0 | 1.0 | 0.0 | 0.0 | 153.0 | 0.0 | 0.0 | 0.0 | 62.0 | 0.0 | 0.0 | 0.0 | 2.0 |
05 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 441.0 | 3.0 |
06 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 1.0 | 438.0 | 1.0 | 4.0 | 2.0 | 2.0 | 0.0 | 1.0 | 0.0 |
07 | 0.0 | 16.0 | 2.0 | 426.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 2.0 | 1.0 |
08 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 432.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 37.0 | 377.0 | 0.0 | 39.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 36.0 | 1.0 | 0.0 | 0.0 | 376.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 36.0 | 3.0 | 0.0 | 0.0 |
11 | 448.0 | 0.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
12 | 11.0 | 144.0 | 46.0 | 251.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
13 | 1.0 | 3.0 | 5.0 | 2.0 | 55.0 | 36.0 | 4.0 | 50.0 | 23.0 | 7.0 | 6.0 | 10.0 | 76.0 | 78.0 | 49.0 | 48.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 1.09 | -1.358 | 0.953 | -0.163 | -0.011 | -2.138 | -1.358 | -0.501 | 0.121 | -0.925 | -0.011 | -1.231 | -0.084 | -0.925 | 0.824 | -0.047 |
02 | 0.48 | -0.047 | 0.911 | -0.047 | -1.118 | -1.017 | -1.674 | -1.231 | 0.342 | 0.121 | 1.005 | -0.163 | -0.763 | -1.358 | 0.151 | -0.205 |
03 | 0.621 | -0.248 | 0.121 | -3.033 | 0.71 | -0.561 | -2.489 | -4.318 | 1.147 | 0.953 | -0.248 | -3.033 | 0.181 | 0.39 | -1.503 | -4.318 |
04 | -4.318 | -1.879 | -4.318 | 2.087 | -3.033 | -4.318 | -4.318 | 1.676 | -4.318 | -4.318 | -4.318 | 0.777 | -4.318 | -4.318 | -4.318 | -2.489 |
05 | -4.318 | -3.033 | -4.318 | -4.318 | -4.318 | -4.318 | -1.879 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -1.879 | 2.733 | -2.138 |
06 | -4.318 | -4.318 | -4.318 | -4.318 | -1.879 | -4.318 | -4.318 | -3.033 | 2.726 | -3.033 | -1.879 | -2.489 | -2.489 | -4.318 | -3.033 | -4.318 |
07 | -4.318 | -0.561 | -2.489 | 2.699 | -4.318 | -4.318 | -4.318 | -3.033 | -3.033 | -4.318 | -4.318 | -1.879 | -4.318 | -4.318 | -2.489 | -3.033 |
08 | -4.318 | -4.318 | -3.033 | -4.318 | -4.318 | -4.318 | -0.561 | -4.318 | -4.318 | -4.318 | -1.879 | -4.318 | -4.318 | -4.318 | 2.713 | -4.318 |
09 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | 0.264 | 2.577 | -4.318 | 0.317 | -4.318 | -4.318 | -4.318 | -4.318 |
10 | 0.237 | -3.033 | -4.318 | -4.318 | 2.574 | -4.318 | -4.318 | -3.033 | -4.318 | -4.318 | -4.318 | -4.318 | 0.237 | -2.138 | -4.318 | -4.318 |
11 | 2.749 | -4.318 | -4.318 | -4.318 | -1.879 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -3.033 | -4.318 |
12 | -0.925 | 1.616 | 0.48 | 2.17 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -3.033 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 | -4.318 |
13 | -3.033 | -2.138 | -1.674 | -2.489 | 0.658 | 0.237 | -1.879 | 0.563 | -0.205 | -1.358 | -1.503 | -1.017 | 0.979 | 1.005 | 0.543 | 0.522 |