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Model info
Transcription factorGATA6
(GeneCards)
ModelGATA6_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnnnnnnvWGATAASvn
Best auROC (human)0.977
Best auROC (mouse)0.946
Peak sets in benchmark (human)29
Peak sets in benchmark (mouse)7
Aligned words394
TF familyGATA-type zinc fingers {2.2.1}
TF subfamilyTwo zinc-finger GATA factors {2.2.1.1}
HGNCHGNC:4174
EntrezGeneGeneID:2627
(SSTAR profile)
UniProt IDGATA6_HUMAN
UniProt ACQ92908
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.40111
0.0005 11.542860000000001
0.0001 16.194560000000003
GTEx tissue expression atlas GATA6 expression
ReMap ChIP-seq dataset list GATA6 datasets
Motifs in JASPAR
MA1104.1 (GATA6; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0122.016.021.026.041.039.04.010.027.057.030.011.014.027.034.011.0
0238.022.024.020.045.040.06.048.019.025.029.016.012.023.015.08.0
0329.022.046.017.043.034.05.028.010.024.019.021.07.022.038.025.0
0423.020.030.016.036.029.05.032.030.031.027.020.012.020.025.034.0
0526.012.032.031.043.023.08.026.024.015.033.015.020.022.032.028.0
0615.044.043.011.022.037.03.010.016.046.035.08.029.032.024.015.0
0769.00.03.010.056.04.00.099.076.03.00.026.025.00.00.019.0
081.00.0225.00.00.00.07.00.00.00.03.00.00.01.0153.00.0
091.00.00.00.00.01.00.00.0382.01.02.03.00.00.00.00.0
104.02.02.0375.00.01.00.01.00.00.00.02.00.00.00.03.0
113.00.01.00.03.00.00.00.00.02.00.00.0358.01.00.022.0
12343.03.011.07.03.00.00.00.01.00.00.00.018.00.03.01.0
1332.052.0277.04.01.00.01.01.02.05.06.01.00.02.04.02.0
1415.07.010.03.037.08.010.04.0123.054.0105.06.02.00.04.02.0
1530.020.066.061.021.018.00.030.049.027.035.018.07.01.02.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.101-0.413-0.1470.0640.5140.464-1.733-0.870.1010.8410.205-0.778-0.5430.1010.329-0.778
020.439-0.101-0.015-0.1950.6060.489-1.3570.67-0.2450.0250.171-0.413-0.693-0.057-0.476-1.084
030.171-0.1010.628-0.3540.5610.329-1.5270.137-0.87-0.015-0.245-0.147-1.211-0.1010.4390.025
04-0.057-0.1950.205-0.4130.3850.171-1.5270.2690.2050.2370.101-0.195-0.693-0.1950.0250.329
050.064-0.6930.2690.2370.561-0.057-1.0840.064-0.015-0.4760.299-0.476-0.195-0.1010.2690.137
06-0.4760.5840.561-0.778-0.1010.412-1.993-0.87-0.4130.6280.357-1.0840.1710.269-0.015-0.476
071.031-4.195-1.993-0.870.823-1.733-4.1951.391.127-1.993-4.1950.0640.025-4.195-4.195-0.245
08-2.892-4.1952.209-4.195-4.195-4.195-1.211-4.195-4.195-4.195-1.993-4.195-4.195-2.8921.824-4.195
09-2.892-4.195-4.195-4.195-4.195-2.892-4.195-4.1952.738-2.892-2.345-1.993-4.195-4.195-4.195-4.195
10-1.733-2.345-2.3452.719-4.195-2.892-4.195-2.892-4.195-4.195-4.195-2.345-4.195-4.195-4.195-1.993
11-1.993-4.195-2.892-4.195-1.993-4.195-4.195-4.195-4.195-2.345-4.195-4.1952.673-2.892-4.195-0.101
122.63-1.993-0.778-1.211-1.993-4.195-4.195-4.195-2.892-4.195-4.195-4.195-0.298-4.195-1.993-2.892
130.2690.752.417-1.733-2.892-4.195-2.892-2.892-2.345-1.527-1.357-2.892-4.195-2.345-1.733-2.345
14-0.476-1.211-0.87-1.9930.412-1.084-0.87-1.7331.6060.7871.449-1.357-2.345-4.195-1.733-2.345
150.205-0.1950.9870.908-0.147-0.298-4.1950.2050.6910.1010.357-0.298-1.211-2.892-2.345-1.527