Check the newest release v12
Model info
Transcription factorHOXB13
(GeneCards)
ModelHXB13_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusdKTTTATKRbnhddbh
Best auROC (human)0.887
Best auROC (mouse)
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)
Aligned words507
TF familyHOX-related factors {3.1.1}
TF subfamilyHOX9-13 {3.1.1.8}
HGNCHGNC:5112
EntrezGeneGeneID:10481
(SSTAR profile)
UniProt IDHXB13_HUMAN
UniProt ACQ92826
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.10866
0.0005 13.326260000000001
0.0001 17.40556
GTEx tissue expression atlas HOXB13 expression
ReMap ChIP-seq dataset list HOXB13 datasets
Motifs in JASPAR
MA0901.1 (HOXB13; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.010.017.0123.010.02.03.044.08.01.09.064.017.08.013.0167.0
020.00.02.037.00.00.00.021.01.00.00.041.01.01.05.0391.0
030.00.00.02.00.00.00.01.00.00.00.07.02.09.00.0479.0
040.00.00.02.00.09.00.00.00.00.00.00.02.099.03.0385.0
052.00.00.00.0108.00.00.00.03.00.00.00.0386.00.00.01.0
063.022.01.0473.00.00.00.00.00.00.00.00.00.00.00.01.0
071.00.01.01.07.00.03.012.00.00.00.01.064.02.0121.0287.0
088.02.049.013.01.00.01.00.046.01.062.016.058.07.0189.047.0
092.017.076.018.00.04.06.00.012.0103.0125.061.04.07.054.011.0
101.010.05.02.043.043.01.044.066.062.069.064.022.032.014.022.0
1115.030.014.073.024.034.04.085.04.030.09.046.012.032.024.064.0
128.014.020.013.036.019.00.071.011.07.07.026.037.030.050.0151.0
1326.08.026.032.033.05.01.031.022.012.016.027.041.026.080.0114.0
149.022.028.063.05.020.05.021.018.020.013.072.037.027.070.070.0
1527.014.07.021.028.010.04.047.025.041.011.039.065.024.044.093.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.975-1.114-0.5991.361-1.114-2.584-2.2340.339-1.328-3.126-1.2150.711-0.599-1.328-0.861.666
02-4.4-4.4-2.5840.167-4.4-4.4-4.4-0.392-3.126-4.4-4.40.269-3.126-3.126-1.772.515
03-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.454-2.584-1.215-4.42.718
04-4.4-4.4-4.4-2.584-4.4-1.215-4.4-4.4-4.4-4.4-4.4-4.4-2.5841.145-2.2342.5
05-2.584-4.4-4.4-4.41.231-4.4-4.4-4.4-2.234-4.4-4.4-4.42.502-4.4-4.4-3.126
06-2.234-0.346-3.1262.706-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126
07-3.126-4.4-3.126-3.126-1.454-4.4-2.234-0.938-4.4-4.4-4.4-3.1260.711-2.5841.3452.206
08-1.328-2.5840.445-0.86-3.126-4.4-3.126-4.40.383-3.1260.679-0.6580.613-1.4541.7890.404
09-2.584-0.5990.881-0.543-4.4-1.975-1.6-4.4-0.9381.1841.3770.663-1.975-1.4540.542-1.022
10-3.126-1.114-1.77-2.5840.3160.316-3.1260.3390.7410.6790.7850.711-0.3460.023-0.788-0.346
11-0.721-0.04-0.7880.841-0.260.083-1.9750.993-1.975-0.04-1.2150.383-0.9380.023-0.260.711
12-1.328-0.788-0.439-0.860.14-0.49-4.40.814-1.022-1.454-1.454-0.1810.167-0.040.4651.565
13-0.181-1.328-0.1810.0230.054-1.77-3.126-0.008-0.346-0.938-0.658-0.1440.269-0.1810.9321.285
14-1.215-0.346-0.1080.695-1.77-0.439-1.77-0.392-0.543-0.439-0.860.8280.167-0.1440.80.8
15-0.144-0.788-1.454-0.392-0.108-1.114-1.9750.404-0.220.269-1.0220.2190.726-0.260.3391.082