Transcription factor | MEIS1 (GeneCards) | ||||||||
Model | MEIS1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | ndTGAYTdATKdbn | ||||||||
Best auROC (human) | 0.848 | ||||||||
Best auROC (mouse) | 0.952 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 37 | ||||||||
Aligned words | 500 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | MEIS {3.1.4.2} | ||||||||
HGNC | HGNC:7000 | ||||||||
EntrezGene | GeneID:4211 (SSTAR profile) | ||||||||
UniProt ID | MEIS1_HUMAN | ||||||||
UniProt AC | O00470 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | MEIS1 expression | ||||||||
ReMap ChIP-seq dataset list | MEIS1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 46.0 | 17.0 | 55.0 | 5.0 | 58.0 | 11.0 | 9.0 | 32.0 | 78.0 | 7.0 | 23.0 | 21.0 | 46.0 | 12.0 | 40.0 | 38.0 |
02 | 50.0 | 0.0 | 5.0 | 173.0 | 5.0 | 0.0 | 0.0 | 42.0 | 16.0 | 0.0 | 4.0 | 107.0 | 6.0 | 0.0 | 1.0 | 89.0 |
03 | 9.0 | 0.0 | 67.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 5.0 | 0.0 | 31.0 | 0.0 | 373.0 | 7.0 |
04 | 41.0 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 444.0 | 1.0 | 0.0 | 0.0 | 6.0 | 1.0 | 1.0 | 0.0 |
05 | 23.0 | 45.0 | 32.0 | 391.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 4.0 |
06 | 3.0 | 0.0 | 3.0 | 17.0 | 21.0 | 0.0 | 2.0 | 22.0 | 3.0 | 1.0 | 1.0 | 27.0 | 41.0 | 3.0 | 29.0 | 325.0 |
07 | 34.0 | 2.0 | 13.0 | 19.0 | 1.0 | 1.0 | 0.0 | 2.0 | 9.0 | 1.0 | 18.0 | 7.0 | 54.0 | 15.0 | 83.0 | 239.0 |
08 | 96.0 | 1.0 | 1.0 | 0.0 | 17.0 | 1.0 | 1.0 | 0.0 | 112.0 | 0.0 | 2.0 | 0.0 | 245.0 | 8.0 | 14.0 | 0.0 |
09 | 30.0 | 38.0 | 14.0 | 388.0 | 5.0 | 0.0 | 1.0 | 4.0 | 0.0 | 2.0 | 0.0 | 16.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 3.0 | 1.0 | 21.0 | 10.0 | 14.0 | 1.0 | 8.0 | 17.0 | 1.0 | 0.0 | 4.0 | 10.0 | 45.0 | 10.0 | 246.0 | 107.0 |
11 | 11.0 | 5.0 | 38.0 | 9.0 | 5.0 | 2.0 | 3.0 | 2.0 | 109.0 | 16.0 | 90.0 | 64.0 | 36.0 | 10.0 | 68.0 | 30.0 |
12 | 18.0 | 76.0 | 35.0 | 32.0 | 9.0 | 11.0 | 1.0 | 12.0 | 17.0 | 84.0 | 56.0 | 42.0 | 8.0 | 41.0 | 31.0 | 25.0 |
13 | 5.0 | 18.0 | 16.0 | 13.0 | 57.0 | 58.0 | 8.0 | 89.0 | 19.0 | 42.0 | 26.0 | 36.0 | 16.0 | 26.0 | 38.0 | 31.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.387 | -0.595 | 0.564 | -1.766 | 0.617 | -1.018 | -1.211 | 0.027 | 0.911 | -1.451 | -0.298 | -0.388 | 0.387 | -0.934 | 0.248 | 0.197 |
02 | 0.469 | -4.397 | -1.766 | 1.705 | -1.766 | -4.397 | -4.397 | 0.296 | -0.654 | -4.397 | -1.971 | 1.226 | -1.596 | -4.397 | -3.122 | 1.043 |
03 | -1.211 | -4.397 | 0.76 | -3.122 | -4.397 | -4.397 | -4.397 | -4.397 | -1.766 | -4.397 | -1.766 | -4.397 | -0.004 | -4.397 | 2.472 | -1.451 |
04 | 0.273 | -4.397 | -4.397 | -1.971 | -4.397 | -4.397 | -4.397 | -4.397 | 2.646 | -3.122 | -4.397 | -4.397 | -1.596 | -3.122 | -3.122 | -4.397 |
05 | -0.298 | 0.365 | 0.027 | 2.519 | -4.397 | -4.397 | -4.397 | -2.58 | -4.397 | -4.397 | -4.397 | -3.122 | -4.397 | -4.397 | -4.397 | -1.971 |
06 | -2.23 | -4.397 | -2.23 | -0.595 | -0.388 | -4.397 | -2.58 | -0.342 | -2.23 | -3.122 | -3.122 | -0.14 | 0.273 | -2.23 | -0.07 | 2.335 |
07 | 0.087 | -2.58 | -0.856 | -0.486 | -3.122 | -3.122 | -4.397 | -2.58 | -1.211 | -3.122 | -0.539 | -1.451 | 0.546 | -0.717 | 0.973 | 2.028 |
08 | 1.118 | -3.122 | -3.122 | -4.397 | -0.595 | -3.122 | -3.122 | -4.397 | 1.272 | -4.397 | -2.58 | -4.397 | 2.052 | -1.324 | -0.784 | -4.397 |
09 | -0.036 | 0.197 | -0.784 | 2.512 | -1.766 | -4.397 | -3.122 | -1.971 | -4.397 | -2.58 | -4.397 | -0.654 | -4.397 | -4.397 | -4.397 | -4.397 |
10 | -2.23 | -3.122 | -0.388 | -1.11 | -0.784 | -3.122 | -1.324 | -0.595 | -3.122 | -4.397 | -1.971 | -1.11 | 0.365 | -1.11 | 2.057 | 1.226 |
11 | -1.018 | -1.766 | 0.197 | -1.211 | -1.766 | -2.58 | -2.23 | -2.58 | 1.244 | -0.654 | 1.054 | 0.715 | 0.144 | -1.11 | 0.775 | -0.036 |
12 | -0.539 | 0.885 | 0.116 | 0.027 | -1.211 | -1.018 | -3.122 | -0.934 | -0.595 | 0.985 | 0.582 | 0.296 | -1.324 | 0.273 | -0.004 | -0.216 |
13 | -1.766 | -0.539 | -0.654 | -0.856 | 0.599 | 0.617 | -1.324 | 1.043 | -0.486 | 0.296 | -0.177 | 0.144 | -0.654 | -0.177 | 0.197 | -0.004 |