Check the newest release v12
Model info
Transcription factorMITF
(GeneCards)
ModelMITF_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnvYCACGTGAChn
Best auROC (human)0.999
Best auROC (mouse)0.816
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words518
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyTFE3-like factors {1.2.6.1}
HGNCHGNC:7105
EntrezGeneGeneID:4286
(SSTAR profile)
UniProt IDMITF_HUMAN
UniProt ACO75030
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.13176
0.0005 7.402660000000001
0.0001 12.095155
GTEx tissue expression atlas MITF expression
ReMap ChIP-seq dataset list MITF datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.022.075.03.080.034.034.04.061.034.035.03.021.015.036.03.0
028.048.025.0121.09.043.06.047.09.024.017.0130.01.05.06.01.0
030.026.01.00.00.0120.00.00.00.054.00.00.00.0299.00.00.0
040.00.00.00.0447.015.06.031.01.00.00.00.00.00.00.00.0
051.0408.07.032.00.015.00.00.00.05.00.01.00.022.01.08.0
060.00.01.00.090.08.0352.00.01.03.04.00.00.00.041.00.0
073.00.00.088.00.00.00.011.01.00.00.0397.00.00.00.00.0
080.00.04.00.00.00.00.00.00.00.00.00.00.03.0492.01.0
090.00.00.00.02.01.00.00.0443.028.017.08.01.00.00.00.0
101.0375.014.056.08.010.01.010.00.014.00.03.00.06.00.02.0
111.05.03.00.084.0228.016.077.04.07.01.03.09.043.09.010.0
1211.033.029.025.070.088.025.0100.07.016.03.03.08.025.027.030.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.244-0.3460.868-2.2340.9320.0830.083-1.9750.6630.0830.112-2.234-0.392-0.7210.14-2.234
02-1.3280.425-0.221.345-1.2150.316-1.60.404-1.215-0.26-0.5991.416-3.126-1.77-1.6-3.126
03-4.4-0.181-3.126-4.4-4.41.336-4.4-4.4-4.40.542-4.4-4.4-4.42.247-4.4-4.4
04-4.4-4.4-4.4-4.42.649-0.721-1.6-0.008-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-3.1262.558-1.4540.023-4.4-0.721-4.4-4.4-4.4-1.77-4.4-3.126-4.4-0.346-3.126-1.328
06-4.4-4.4-3.126-4.41.05-1.3282.41-4.4-3.126-2.234-1.975-4.4-4.4-4.40.269-4.4
07-2.234-4.4-4.41.027-4.4-4.4-4.4-1.022-3.126-4.4-4.42.531-4.4-4.4-4.4-4.4
08-4.4-4.4-1.975-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.2342.745-3.126
09-4.4-4.4-4.4-4.4-2.584-3.126-4.4-4.42.64-0.108-0.599-1.328-3.126-4.4-4.4-4.4
10-3.1262.474-0.7880.578-1.328-1.114-3.126-1.114-4.4-0.788-4.4-2.234-4.4-1.6-4.4-2.584
11-3.126-1.77-2.234-4.40.9811.977-0.6580.894-1.975-1.454-3.126-2.234-1.2150.316-1.215-1.114
12-1.0220.054-0.074-0.220.81.027-0.221.155-1.454-0.658-2.234-2.234-1.328-0.22-0.144-0.04