Transcription factor | MITF (GeneCards) | ||||||||
Model | MITF_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 13 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvYCACGTGAChn | ||||||||
Best auROC (human) | 0.999 | ||||||||
Best auROC (mouse) | 0.816 | ||||||||
Peak sets in benchmark (human) | 28 | ||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 518 | ||||||||
TF family | bHLH-ZIP factors {1.2.6} | ||||||||
TF subfamily | TFE3-like factors {1.2.6.1} | ||||||||
HGNC | HGNC:7105 | ||||||||
EntrezGene | GeneID:4286 (SSTAR profile) | ||||||||
UniProt ID | MITF_HUMAN | ||||||||
UniProt AC | O75030 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | MITF expression | ||||||||
ReMap ChIP-seq dataset list | MITF datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 40.0 | 22.0 | 75.0 | 3.0 | 80.0 | 34.0 | 34.0 | 4.0 | 61.0 | 34.0 | 35.0 | 3.0 | 21.0 | 15.0 | 36.0 | 3.0 |
02 | 8.0 | 48.0 | 25.0 | 121.0 | 9.0 | 43.0 | 6.0 | 47.0 | 9.0 | 24.0 | 17.0 | 130.0 | 1.0 | 5.0 | 6.0 | 1.0 |
03 | 0.0 | 26.0 | 1.0 | 0.0 | 0.0 | 120.0 | 0.0 | 0.0 | 0.0 | 54.0 | 0.0 | 0.0 | 0.0 | 299.0 | 0.0 | 0.0 |
04 | 0.0 | 0.0 | 0.0 | 0.0 | 447.0 | 15.0 | 6.0 | 31.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
05 | 1.0 | 408.0 | 7.0 | 32.0 | 0.0 | 15.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 1.0 | 0.0 | 22.0 | 1.0 | 8.0 |
06 | 0.0 | 0.0 | 1.0 | 0.0 | 90.0 | 8.0 | 352.0 | 0.0 | 1.0 | 3.0 | 4.0 | 0.0 | 0.0 | 0.0 | 41.0 | 0.0 |
07 | 3.0 | 0.0 | 0.0 | 88.0 | 0.0 | 0.0 | 0.0 | 11.0 | 1.0 | 0.0 | 0.0 | 397.0 | 0.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 492.0 | 1.0 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 | 0.0 | 443.0 | 28.0 | 17.0 | 8.0 | 1.0 | 0.0 | 0.0 | 0.0 |
10 | 1.0 | 375.0 | 14.0 | 56.0 | 8.0 | 10.0 | 1.0 | 10.0 | 0.0 | 14.0 | 0.0 | 3.0 | 0.0 | 6.0 | 0.0 | 2.0 |
11 | 1.0 | 5.0 | 3.0 | 0.0 | 84.0 | 228.0 | 16.0 | 77.0 | 4.0 | 7.0 | 1.0 | 3.0 | 9.0 | 43.0 | 9.0 | 10.0 |
12 | 11.0 | 33.0 | 29.0 | 25.0 | 70.0 | 88.0 | 25.0 | 100.0 | 7.0 | 16.0 | 3.0 | 3.0 | 8.0 | 25.0 | 27.0 | 30.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.244 | -0.346 | 0.868 | -2.234 | 0.932 | 0.083 | 0.083 | -1.975 | 0.663 | 0.083 | 0.112 | -2.234 | -0.392 | -0.721 | 0.14 | -2.234 |
02 | -1.328 | 0.425 | -0.22 | 1.345 | -1.215 | 0.316 | -1.6 | 0.404 | -1.215 | -0.26 | -0.599 | 1.416 | -3.126 | -1.77 | -1.6 | -3.126 |
03 | -4.4 | -0.181 | -3.126 | -4.4 | -4.4 | 1.336 | -4.4 | -4.4 | -4.4 | 0.542 | -4.4 | -4.4 | -4.4 | 2.247 | -4.4 | -4.4 |
04 | -4.4 | -4.4 | -4.4 | -4.4 | 2.649 | -0.721 | -1.6 | -0.008 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
05 | -3.126 | 2.558 | -1.454 | 0.023 | -4.4 | -0.721 | -4.4 | -4.4 | -4.4 | -1.77 | -4.4 | -3.126 | -4.4 | -0.346 | -3.126 | -1.328 |
06 | -4.4 | -4.4 | -3.126 | -4.4 | 1.05 | -1.328 | 2.41 | -4.4 | -3.126 | -2.234 | -1.975 | -4.4 | -4.4 | -4.4 | 0.269 | -4.4 |
07 | -2.234 | -4.4 | -4.4 | 1.027 | -4.4 | -4.4 | -4.4 | -1.022 | -3.126 | -4.4 | -4.4 | 2.531 | -4.4 | -4.4 | -4.4 | -4.4 |
08 | -4.4 | -4.4 | -1.975 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.234 | 2.745 | -3.126 |
09 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | -3.126 | -4.4 | -4.4 | 2.64 | -0.108 | -0.599 | -1.328 | -3.126 | -4.4 | -4.4 | -4.4 |
10 | -3.126 | 2.474 | -0.788 | 0.578 | -1.328 | -1.114 | -3.126 | -1.114 | -4.4 | -0.788 | -4.4 | -2.234 | -4.4 | -1.6 | -4.4 | -2.584 |
11 | -3.126 | -1.77 | -2.234 | -4.4 | 0.981 | 1.977 | -0.658 | 0.894 | -1.975 | -1.454 | -3.126 | -2.234 | -1.215 | 0.316 | -1.215 | -1.114 |
12 | -1.022 | 0.054 | -0.074 | -0.22 | 0.8 | 1.027 | -0.22 | 1.155 | -1.454 | -0.658 | -2.234 | -2.234 | -1.328 | -0.22 | -0.144 | -0.04 |