Check the newest release v12
Model info
Transcription factorNKX3-1
(GeneCards)
ModelNKX31_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusnbWRWGTRYYh
Best auROC (human)0.844
Best auROC (mouse)0.798
Peak sets in benchmark (human)11
Peak sets in benchmark (mouse)10
Aligned words427
TF familyNK-related factors {3.1.2}
TF subfamilyNK-3 {3.1.2.16}
HGNCHGNC:7838
EntrezGeneGeneID:4824
(SSTAR profile)
UniProt IDNKX31_HUMAN
UniProt ACQ99801
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.309615
0.0005 12.447295
0.0001 14.256485
GTEx tissue expression atlas NKX3-1 expression
ReMap ChIP-seq dataset list NKX3-1 datasets
Motifs in JASPAR
MA0124.1 (NKX3-1; Homo sapiens)
MA0124.2 (Nkx3-1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0135.029.040.025.09.013.02.052.013.015.010.040.06.044.040.050.0
023.01.01.058.021.09.03.068.012.05.09.066.015.011.022.0119.0
0321.01.028.01.020.00.06.00.026.00.09.00.0153.07.0149.02.0
04126.00.05.089.04.00.00.04.067.01.04.0120.01.00.00.02.0
050.00.0176.022.00.00.00.01.00.00.08.01.00.00.069.0146.0
060.00.00.00.00.00.00.00.011.00.016.0226.02.00.09.0159.0
071.00.012.00.00.00.00.00.013.00.012.00.0130.00.0250.05.0
080.0119.04.021.00.00.00.00.02.0146.045.081.00.05.00.00.0
091.00.00.01.049.063.04.0154.07.012.05.025.018.019.01.064.0
1014.013.017.031.038.022.04.030.04.02.01.03.027.039.033.0145.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.2770.0910.409-0.055-1.051-0.695-2.4230.67-0.695-0.556-0.9490.409-1.4360.5040.4090.631
02-2.072-2.968-2.9680.778-0.227-1.051-2.0720.936-0.773-1.607-1.0510.906-0.556-0.857-0.1811.493
03-0.227-2.9680.057-2.968-0.275-4.262-1.436-4.262-0.016-4.262-1.051-4.2621.744-1.291.718-2.423
041.55-4.262-1.6071.204-1.812-4.262-4.262-1.8120.921-2.968-1.8121.502-2.968-4.262-4.262-2.423
05-4.262-4.2621.884-0.181-4.262-4.262-4.262-2.968-4.262-4.262-1.163-2.968-4.262-4.2620.9511.697
06-4.262-4.262-4.262-4.262-4.262-4.262-4.262-4.262-0.857-4.262-0.4932.133-2.423-4.262-1.0511.782
07-2.968-4.262-0.773-4.262-4.262-4.262-4.262-4.262-0.695-4.262-0.773-4.2621.581-4.2622.234-1.607
08-4.2621.493-1.812-0.227-4.262-4.262-4.262-4.262-2.4231.6970.5261.11-4.262-1.607-4.262-4.262
09-2.968-4.262-4.262-2.9680.6110.86-1.8121.75-1.29-0.773-1.607-0.055-0.378-0.325-2.9680.876
10-0.623-0.695-0.4340.1570.359-0.181-1.8120.125-1.812-2.423-2.968-2.0720.0210.3840.2191.69