Model info
| Transcription factor | Nkx6-1 | ||||||||
| Model | NKX61_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MhWdATKdvhWWWWRAWdd | ||||||||
| Best auROC (human) | 0.379 | ||||||||
| Best auROC (mouse) | 0.953 | ||||||||
| Peak sets in benchmark (human) | 3 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | NK-6 {3.1.2.19} | ||||||||
| MGI | MGI:1206039 | ||||||||
| EntrezGene | GeneID:18096 (SSTAR profile) | ||||||||
| UniProt ID | NKX61_MOUSE | ||||||||
| UniProt AC | Q99MA9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nkx6-1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 306.0 | 66.0 | 62.0 | 64.0 |
| 02 | 91.0 | 119.0 | 80.0 | 208.0 |
| 03 | 136.0 | 30.0 | 36.0 | 296.0 |
| 04 | 287.0 | 39.0 | 105.0 | 67.0 |
| 05 | 465.0 | 6.0 | 14.0 | 13.0 |
| 06 | 27.0 | 12.0 | 60.0 | 399.0 |
| 07 | 29.0 | 38.0 | 250.0 | 181.0 |
| 08 | 112.0 | 31.0 | 216.0 | 139.0 |
| 09 | 80.0 | 149.0 | 200.0 | 69.0 |
| 10 | 172.0 | 132.0 | 60.0 | 134.0 |
| 11 | 206.0 | 26.0 | 34.0 | 232.0 |
| 12 | 147.0 | 26.0 | 35.0 | 290.0 |
| 13 | 113.0 | 25.0 | 20.0 | 340.0 |
| 14 | 51.0 | 42.0 | 21.0 | 384.0 |
| 15 | 300.0 | 66.0 | 113.0 | 19.0 |
| 16 | 476.0 | 9.0 | 5.0 | 8.0 |
| 17 | 58.0 | 9.0 | 44.0 | 387.0 |
| 18 | 93.0 | 14.0 | 183.0 | 208.0 |
| 19 | 215.0 | 44.0 | 185.0 | 54.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.892 | -0.624 | -0.685 | -0.654 |
| 02 | -0.309 | -0.045 | -0.435 | 0.508 |
| 03 | 0.087 | -1.385 | -1.211 | 0.859 |
| 04 | 0.828 | -1.134 | -0.168 | -0.609 |
| 05 | 1.309 | -2.815 | -2.092 | -2.159 |
| 06 | -1.485 | -2.23 | -0.717 | 1.156 |
| 07 | -1.417 | -1.159 | 0.691 | 0.37 |
| 08 | -0.104 | -1.354 | 0.546 | 0.109 |
| 09 | -0.435 | 0.178 | 0.469 | -0.58 |
| 10 | 0.32 | 0.058 | -0.717 | 0.073 |
| 11 | 0.499 | -1.521 | -1.266 | 0.617 |
| 12 | 0.164 | -1.521 | -1.238 | 0.839 |
| 13 | -0.096 | -1.558 | -1.766 | 0.997 |
| 14 | -0.875 | -1.063 | -1.721 | 1.118 |
| 15 | 0.872 | -0.624 | -0.096 | -1.814 |
| 16 | 1.332 | -2.48 | -2.957 | -2.58 |
| 17 | -0.75 | -2.48 | -1.018 | 1.126 |
| 18 | -0.288 | -2.092 | 0.381 | 0.508 |
| 19 | 0.541 | -1.018 | 0.392 | -0.819 |