Transcription factor | NR1D1 (GeneCards) | ||||||||
Model | NR1D1_HUMAN.H11DI.0.B | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvnvWbKRGGbCAvnndvn | ||||||||
Best auROC (human) | 0.59 | ||||||||
Best auROC (mouse) | 0.907 | ||||||||
Peak sets in benchmark (human) | 1 | ||||||||
Peak sets in benchmark (mouse) | 53 | ||||||||
Aligned words | 508 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Rev-ErbA (NR1D) {2.1.2.3} | ||||||||
HGNC | HGNC:7962 | ||||||||
EntrezGene | GeneID:9572 (SSTAR profile) | ||||||||
UniProt ID | NR1D1_HUMAN | ||||||||
UniProt AC | P20393 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NR1D1 expression | ||||||||
ReMap ChIP-seq dataset list | NR1D1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 32.0 | 22.0 | 76.0 | 9.0 | 33.0 | 23.0 | 12.0 | 12.0 | 39.0 | 60.0 | 81.0 | 8.0 | 15.0 | 11.0 | 43.0 | 24.0 |
02 | 44.0 | 13.0 | 45.0 | 17.0 | 28.0 | 52.0 | 18.0 | 18.0 | 70.0 | 12.0 | 86.0 | 44.0 | 13.0 | 8.0 | 18.0 | 14.0 |
03 | 111.0 | 14.0 | 23.0 | 7.0 | 57.0 | 19.0 | 3.0 | 6.0 | 77.0 | 46.0 | 34.0 | 10.0 | 33.0 | 42.0 | 8.0 | 10.0 |
04 | 181.0 | 7.0 | 23.0 | 67.0 | 72.0 | 3.0 | 14.0 | 32.0 | 17.0 | 5.0 | 36.0 | 10.0 | 11.0 | 1.0 | 8.0 | 13.0 |
05 | 35.0 | 93.0 | 107.0 | 46.0 | 7.0 | 1.0 | 4.0 | 4.0 | 15.0 | 43.0 | 14.0 | 9.0 | 10.0 | 60.0 | 36.0 | 16.0 |
06 | 9.0 | 4.0 | 17.0 | 37.0 | 26.0 | 18.0 | 21.0 | 132.0 | 10.0 | 16.0 | 20.0 | 115.0 | 3.0 | 5.0 | 30.0 | 37.0 |
07 | 19.0 | 1.0 | 26.0 | 2.0 | 33.0 | 0.0 | 10.0 | 0.0 | 47.0 | 7.0 | 33.0 | 1.0 | 108.0 | 2.0 | 207.0 | 4.0 |
08 | 4.0 | 0.0 | 193.0 | 10.0 | 1.0 | 0.0 | 9.0 | 0.0 | 9.0 | 3.0 | 243.0 | 21.0 | 0.0 | 0.0 | 6.0 | 1.0 |
09 | 0.0 | 0.0 | 14.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 1.0 | 9.0 | 431.0 | 10.0 | 0.0 | 0.0 | 30.0 | 2.0 |
10 | 0.0 | 0.0 | 0.0 | 1.0 | 2.0 | 3.0 | 0.0 | 4.0 | 26.0 | 91.0 | 103.0 | 258.0 | 1.0 | 2.0 | 1.0 | 8.0 |
11 | 3.0 | 25.0 | 0.0 | 1.0 | 4.0 | 89.0 | 0.0 | 3.0 | 18.0 | 80.0 | 5.0 | 1.0 | 7.0 | 236.0 | 6.0 | 22.0 |
12 | 29.0 | 1.0 | 2.0 | 0.0 | 407.0 | 4.0 | 14.0 | 5.0 | 11.0 | 0.0 | 0.0 | 0.0 | 27.0 | 0.0 | 0.0 | 0.0 |
13 | 60.0 | 131.0 | 243.0 | 40.0 | 1.0 | 2.0 | 0.0 | 2.0 | 1.0 | 8.0 | 6.0 | 1.0 | 0.0 | 2.0 | 3.0 | 0.0 |
14 | 24.0 | 10.0 | 18.0 | 10.0 | 40.0 | 22.0 | 34.0 | 47.0 | 58.0 | 32.0 | 90.0 | 72.0 | 16.0 | 6.0 | 9.0 | 12.0 |
15 | 34.0 | 21.0 | 55.0 | 28.0 | 24.0 | 29.0 | 8.0 | 9.0 | 54.0 | 34.0 | 35.0 | 28.0 | 36.0 | 7.0 | 79.0 | 19.0 |
16 | 35.0 | 4.0 | 80.0 | 29.0 | 25.0 | 7.0 | 35.0 | 24.0 | 23.0 | 8.0 | 104.0 | 42.0 | 6.0 | 6.0 | 42.0 | 30.0 |
17 | 25.0 | 15.0 | 40.0 | 9.0 | 7.0 | 8.0 | 5.0 | 5.0 | 45.0 | 55.0 | 131.0 | 30.0 | 17.0 | 27.0 | 61.0 | 20.0 |
18 | 26.0 | 22.0 | 33.0 | 13.0 | 25.0 | 26.0 | 17.0 | 37.0 | 48.0 | 58.0 | 67.0 | 64.0 | 10.0 | 20.0 | 15.0 | 19.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.023 | -0.346 | 0.881 | -1.215 | 0.054 | -0.302 | -0.938 | -0.938 | 0.219 | 0.646 | 0.945 | -1.328 | -0.721 | -1.022 | 0.316 | -0.26 |
02 | 0.339 | -0.86 | 0.361 | -0.599 | -0.108 | 0.504 | -0.543 | -0.543 | 0.8 | -0.938 | 1.004 | 0.339 | -0.86 | -1.328 | -0.543 | -0.788 |
03 | 1.259 | -0.788 | -0.302 | -1.454 | 0.595 | -0.49 | -2.234 | -1.6 | 0.894 | 0.383 | 0.083 | -1.114 | 0.054 | 0.293 | -1.328 | -1.114 |
04 | 1.746 | -1.454 | -0.302 | 0.756 | 0.828 | -2.234 | -0.788 | 0.023 | -0.599 | -1.77 | 0.14 | -1.114 | -1.022 | -3.126 | -1.328 | -0.86 |
05 | 0.112 | 1.082 | 1.222 | 0.383 | -1.454 | -3.126 | -1.975 | -1.975 | -0.721 | 0.316 | -0.788 | -1.215 | -1.114 | 0.646 | 0.14 | -0.658 |
06 | -1.215 | -1.975 | -0.599 | 0.167 | -0.181 | -0.543 | -0.392 | 1.431 | -1.114 | -0.658 | -0.439 | 1.294 | -2.234 | -1.77 | -0.04 | 0.167 |
07 | -0.49 | -3.126 | -0.181 | -2.584 | 0.054 | -4.4 | -1.114 | -4.4 | 0.404 | -1.454 | 0.054 | -3.126 | 1.231 | -2.584 | 1.88 | -1.975 |
08 | -1.975 | -4.4 | 1.81 | -1.114 | -3.126 | -4.4 | -1.215 | -4.4 | -1.215 | -2.234 | 2.04 | -0.392 | -4.4 | -4.4 | -1.6 | -3.126 |
09 | -4.4 | -4.4 | -0.788 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 | -3.126 | -1.215 | 2.613 | -1.114 | -4.4 | -4.4 | -0.04 | -2.584 |
10 | -4.4 | -4.4 | -4.4 | -3.126 | -2.584 | -2.234 | -4.4 | -1.975 | -0.181 | 1.061 | 1.184 | 2.1 | -3.126 | -2.584 | -3.126 | -1.328 |
11 | -2.234 | -0.22 | -4.4 | -3.126 | -1.975 | 1.039 | -4.4 | -2.234 | -0.543 | 0.932 | -1.77 | -3.126 | -1.454 | 2.011 | -1.6 | -0.346 |
12 | -0.074 | -3.126 | -2.584 | -4.4 | 2.555 | -1.975 | -0.788 | -1.77 | -1.022 | -4.4 | -4.4 | -4.4 | -0.144 | -4.4 | -4.4 | -4.4 |
13 | 0.646 | 1.424 | 2.04 | 0.244 | -3.126 | -2.584 | -4.4 | -2.584 | -3.126 | -1.328 | -1.6 | -3.126 | -4.4 | -2.584 | -2.234 | -4.4 |
14 | -0.26 | -1.114 | -0.543 | -1.114 | 0.244 | -0.346 | 0.083 | 0.404 | 0.613 | 0.023 | 1.05 | 0.828 | -0.658 | -1.6 | -1.215 | -0.938 |
15 | 0.083 | -0.392 | 0.56 | -0.108 | -0.26 | -0.074 | -1.328 | -1.215 | 0.542 | 0.083 | 0.112 | -0.108 | 0.14 | -1.454 | 0.92 | -0.49 |
16 | 0.112 | -1.975 | 0.932 | -0.074 | -0.22 | -1.454 | 0.112 | -0.26 | -0.302 | -1.328 | 1.194 | 0.293 | -1.6 | -1.6 | 0.293 | -0.04 |
17 | -0.22 | -0.721 | 0.244 | -1.215 | -1.454 | -1.328 | -1.77 | -1.77 | 0.361 | 0.56 | 1.424 | -0.04 | -0.599 | -0.144 | 0.663 | -0.439 |
18 | -0.181 | -0.346 | 0.054 | -0.86 | -0.22 | -0.181 | -0.599 | 0.167 | 0.425 | 0.613 | 0.756 | 0.711 | -1.114 | -0.439 | -0.721 | -0.49 |