Transcription factor | NR4A1 (GeneCards) | ||||||||
Model | NR4A1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nAAAKGYCAn | ||||||||
Best auROC (human) | 0.93 | ||||||||
Best auROC (mouse) | 0.516 | ||||||||
Peak sets in benchmark (human) | 12 | ||||||||
Peak sets in benchmark (mouse) | 2 | ||||||||
Aligned words | 507 | ||||||||
TF family | NGFI-B-related receptors (NR4) {2.1.4} | ||||||||
TF subfamily | NGFI-B (NR4A1) {2.1.4.0.1} | ||||||||
HGNC | HGNC:7980 | ||||||||
EntrezGene | GeneID:3164 (SSTAR profile) | ||||||||
UniProt ID | NR4A1_HUMAN | ||||||||
UniProt AC | P22736 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NR4A1 expression | ||||||||
ReMap ChIP-seq dataset list | NR4A1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 129.0 | 1.0 | 5.0 | 4.0 | 106.0 | 0.0 | 2.0 | 4.0 | 80.0 | 2.0 | 7.0 | 4.0 | 131.0 | 1.0 | 10.0 | 9.0 |
02 | 431.0 | 0.0 | 9.0 | 6.0 | 1.0 | 0.0 | 3.0 | 0.0 | 21.0 | 0.0 | 3.0 | 0.0 | 16.0 | 0.0 | 3.0 | 2.0 |
03 | 463.0 | 2.0 | 3.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 18.0 | 0.0 | 0.0 | 0.0 | 7.0 | 0.0 | 1.0 | 0.0 |
04 | 6.0 | 3.0 | 322.0 | 157.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 2.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
05 | 0.0 | 1.0 | 5.0 | 1.0 | 0.0 | 1.0 | 4.0 | 0.0 | 5.0 | 2.0 | 313.0 | 5.0 | 2.0 | 1.0 | 154.0 | 1.0 |
06 | 1.0 | 1.0 | 2.0 | 3.0 | 0.0 | 2.0 | 1.0 | 2.0 | 10.0 | 55.0 | 45.0 | 366.0 | 0.0 | 1.0 | 0.0 | 6.0 |
07 | 2.0 | 6.0 | 3.0 | 0.0 | 0.0 | 56.0 | 0.0 | 3.0 | 2.0 | 42.0 | 2.0 | 2.0 | 0.0 | 343.0 | 2.0 | 32.0 |
08 | 2.0 | 0.0 | 2.0 | 0.0 | 422.0 | 1.0 | 10.0 | 14.0 | 5.0 | 1.0 | 0.0 | 1.0 | 24.0 | 3.0 | 9.0 | 1.0 |
09 | 126.0 | 129.0 | 113.0 | 85.0 | 0.0 | 3.0 | 1.0 | 1.0 | 7.0 | 5.0 | 3.0 | 6.0 | 0.0 | 2.0 | 11.0 | 3.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 1.418 | -3.117 | -1.76 | -1.966 | 1.223 | -4.392 | -2.574 | -1.966 | 0.942 | -2.574 | -1.445 | -1.966 | 1.434 | -3.117 | -1.104 | -1.205 |
02 | 2.623 | -4.392 | -1.205 | -1.59 | -3.117 | -4.392 | -2.224 | -4.392 | -0.382 | -4.392 | -2.224 | -4.392 | -0.648 | -4.392 | -2.224 | -2.574 |
03 | 2.694 | -2.574 | -2.224 | -3.117 | -4.392 | -4.392 | -4.392 | -4.392 | -0.533 | -4.392 | -4.392 | -4.392 | -1.445 | -4.392 | -3.117 | -4.392 |
04 | -1.59 | -2.224 | 2.331 | 1.614 | -4.392 | -4.392 | -3.117 | -3.117 | -3.117 | -2.574 | -3.117 | -4.392 | -4.392 | -4.392 | -3.117 | -4.392 |
05 | -4.392 | -3.117 | -1.76 | -3.117 | -4.392 | -3.117 | -1.966 | -4.392 | -1.76 | -2.574 | 2.303 | -1.76 | -2.574 | -3.117 | 1.595 | -3.117 |
06 | -3.117 | -3.117 | -2.574 | -2.224 | -4.392 | -2.574 | -3.117 | -2.574 | -1.104 | 0.57 | 0.371 | 2.459 | -4.392 | -3.117 | -4.392 | -1.59 |
07 | -2.574 | -1.59 | -2.224 | -4.392 | -4.392 | 0.588 | -4.392 | -2.224 | -2.574 | 0.302 | -2.574 | -2.574 | -4.392 | 2.394 | -2.574 | 0.033 |
08 | -2.574 | -4.392 | -2.574 | -4.392 | 2.601 | -3.117 | -1.104 | -0.778 | -1.76 | -3.117 | -4.392 | -3.117 | -0.25 | -2.224 | -1.205 | -3.117 |
09 | 1.395 | 1.418 | 1.286 | 1.003 | -4.392 | -2.224 | -3.117 | -3.117 | -1.445 | -1.76 | -2.224 | -1.59 | -4.392 | -2.574 | -1.012 | -2.224 |