Transcription factor | PAX6 (GeneCards) | ||||||||
Model | PAX6_HUMAN.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | hKYMYGCWTSRvYKv | ||||||||
Best auROC (human) | 0.68 | ||||||||
Best auROC (mouse) | 0.791 | ||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 504 | ||||||||
TF family | Paired plus homeo domain {3.2.1} | ||||||||
TF subfamily | PAX-4/6 {3.2.1.2} | ||||||||
HGNC | HGNC:8620 | ||||||||
EntrezGene | GeneID:5080 (SSTAR profile) | ||||||||
UniProt ID | PAX6_HUMAN | ||||||||
UniProt AC | P26367 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | PAX6 expression | ||||||||
ReMap ChIP-seq dataset list | PAX6 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 10.0 | 4.0 | 8.0 | 34.0 | 28.0 | 3.0 | 8.0 | 96.0 | 6.0 | 5.0 | 8.0 | 17.0 | 23.0 | 5.0 | 43.0 | 202.0 |
02 | 4.0 | 37.0 | 0.0 | 26.0 | 0.0 | 9.0 | 0.0 | 8.0 | 3.0 | 30.0 | 2.0 | 32.0 | 8.0 | 101.0 | 7.0 | 233.0 |
03 | 11.0 | 3.0 | 0.0 | 1.0 | 144.0 | 19.0 | 6.0 | 8.0 | 1.0 | 7.0 | 0.0 | 1.0 | 59.0 | 205.0 | 12.0 | 23.0 |
04 | 4.0 | 147.0 | 2.0 | 62.0 | 27.0 | 141.0 | 0.0 | 66.0 | 1.0 | 9.0 | 0.0 | 8.0 | 2.0 | 20.0 | 2.0 | 9.0 |
05 | 6.0 | 0.0 | 28.0 | 0.0 | 127.0 | 1.0 | 186.0 | 3.0 | 0.0 | 0.0 | 4.0 | 0.0 | 9.0 | 0.0 | 134.0 | 2.0 |
06 | 0.0 | 105.0 | 33.0 | 4.0 | 0.0 | 1.0 | 0.0 | 0.0 | 3.0 | 298.0 | 50.0 | 1.0 | 0.0 | 2.0 | 3.0 | 0.0 |
07 | 0.0 | 3.0 | 0.0 | 0.0 | 162.0 | 58.0 | 6.0 | 180.0 | 27.0 | 15.0 | 5.0 | 39.0 | 1.0 | 1.0 | 0.0 | 3.0 |
08 | 6.0 | 5.0 | 4.0 | 175.0 | 0.0 | 7.0 | 1.0 | 69.0 | 0.0 | 0.0 | 2.0 | 9.0 | 1.0 | 47.0 | 2.0 | 172.0 |
09 | 0.0 | 5.0 | 2.0 | 0.0 | 1.0 | 42.0 | 11.0 | 5.0 | 0.0 | 5.0 | 4.0 | 0.0 | 3.0 | 114.0 | 305.0 | 3.0 |
10 | 1.0 | 0.0 | 2.0 | 1.0 | 140.0 | 7.0 | 12.0 | 7.0 | 184.0 | 16.0 | 93.0 | 29.0 | 4.0 | 1.0 | 2.0 | 1.0 |
11 | 62.0 | 124.0 | 111.0 | 32.0 | 5.0 | 14.0 | 2.0 | 3.0 | 11.0 | 44.0 | 30.0 | 24.0 | 1.0 | 26.0 | 8.0 | 3.0 |
12 | 3.0 | 14.0 | 2.0 | 60.0 | 12.0 | 18.0 | 8.0 | 170.0 | 4.0 | 30.0 | 6.0 | 111.0 | 1.0 | 7.0 | 3.0 | 51.0 |
13 | 2.0 | 1.0 | 15.0 | 2.0 | 12.0 | 0.0 | 47.0 | 10.0 | 9.0 | 0.0 | 4.0 | 6.0 | 26.0 | 6.0 | 307.0 | 53.0 |
14 | 14.0 | 21.0 | 12.0 | 2.0 | 2.0 | 2.0 | 0.0 | 3.0 | 167.0 | 115.0 | 66.0 | 25.0 | 16.0 | 30.0 | 20.0 | 5.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -1.114 | -1.975 | -1.328 | 0.083 | -0.108 | -2.234 | -1.328 | 1.114 | -1.6 | -1.77 | -1.328 | -0.599 | -0.302 | -1.77 | 0.316 | 1.856 |
02 | -1.975 | 0.167 | -4.4 | -0.181 | -4.4 | -1.215 | -4.4 | -1.328 | -2.234 | -0.04 | -2.584 | 0.023 | -1.328 | 1.165 | -1.454 | 1.998 |
03 | -1.022 | -2.234 | -4.4 | -3.126 | 1.518 | -0.49 | -1.6 | -1.328 | -3.126 | -1.454 | -4.4 | -3.126 | 0.63 | 1.871 | -0.938 | -0.302 |
04 | -1.975 | 1.539 | -2.584 | 0.679 | -0.144 | 1.497 | -4.4 | 0.741 | -3.126 | -1.215 | -4.4 | -1.328 | -2.584 | -0.439 | -2.584 | -1.215 |
05 | -1.6 | -4.4 | -0.108 | -4.4 | 1.393 | -3.126 | 1.773 | -2.234 | -4.4 | -4.4 | -1.975 | -4.4 | -1.215 | -4.4 | 1.446 | -2.584 |
06 | -4.4 | 1.203 | 0.054 | -1.975 | -4.4 | -3.126 | -4.4 | -4.4 | -2.234 | 2.244 | 0.465 | -3.126 | -4.4 | -2.584 | -2.234 | -4.4 |
07 | -4.4 | -2.234 | -4.4 | -4.4 | 1.636 | 0.613 | -1.6 | 1.741 | -0.144 | -0.721 | -1.77 | 0.219 | -3.126 | -3.126 | -4.4 | -2.234 |
08 | -1.6 | -1.77 | -1.975 | 1.713 | -4.4 | -1.454 | -3.126 | 0.785 | -4.4 | -4.4 | -2.584 | -1.215 | -3.126 | 0.404 | -2.584 | 1.695 |
09 | -4.4 | -1.77 | -2.584 | -4.4 | -3.126 | 0.293 | -1.022 | -1.77 | -4.4 | -1.77 | -1.975 | -4.4 | -2.234 | 1.285 | 2.267 | -2.234 |
10 | -3.126 | -4.4 | -2.584 | -3.126 | 1.49 | -1.454 | -0.938 | -1.454 | 1.763 | -0.658 | 1.082 | -0.074 | -1.975 | -3.126 | -2.584 | -3.126 |
11 | 0.679 | 1.369 | 1.259 | 0.023 | -1.77 | -0.788 | -2.584 | -2.234 | -1.022 | 0.339 | -0.04 | -0.26 | -3.126 | -0.181 | -1.328 | -2.234 |
12 | -2.234 | -0.788 | -2.584 | 0.646 | -0.938 | -0.543 | -1.328 | 1.684 | -1.975 | -0.04 | -1.6 | 1.259 | -3.126 | -1.454 | -2.234 | 0.485 |
13 | -2.584 | -3.126 | -0.721 | -2.584 | -0.938 | -4.4 | 0.404 | -1.114 | -1.215 | -4.4 | -1.975 | -1.6 | -0.181 | -1.6 | 2.274 | 0.523 |
14 | -0.788 | -0.392 | -0.938 | -2.584 | -2.584 | -2.584 | -4.4 | -2.234 | 1.666 | 1.294 | 0.741 | -0.22 | -0.658 | -0.04 | -0.439 | -1.77 |