Check the newest release v12
Model info
Transcription factorPRDM1
(GeneCards)
ModelPRDM1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length17
Quality
A
Motif rank
0
ConsensusddRMAGKGAAAGTdhnn
Best auROC (human)0.982
Best auROC (mouse)0.959
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)9
Aligned words501
TF familyMore than 3 adjacent zinc finger factors {2.3.3}
TF subfamilyPRDM1-like factors {2.3.3.12}
HGNCHGNC:9346
EntrezGeneGeneID:639
(SSTAR profile)
UniProt IDPRDM1_HUMAN
UniProt ACO75626
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.59411
0.0005 10.90071
0.0001 15.69166
GTEx tissue expression atlas PRDM1 expression
ReMap ChIP-seq dataset list PRDM1 datasets
Motifs in JASPAR
MA0508.1 (PRDM1; Homo sapiens)
MA0508.2 (PRDM1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0157.7611.6190.9117.21339.7089.5327.95512.33844.9117.21632.458.59940.5919.29593.49416.419
02117.16612.23128.62424.94910.72114.1372.06710.728175.85512.50824.33412.11111.95610.11817.12515.371
03265.56710.96628.03611.1324.72710.1811.93512.1545.30515.3656.834.6523.10421.78612.4735.795
04319.8830.032.5076.31357.5130.00.7840.038.4720.7885.5054.51126.4340.04.5872.704
0526.8654.194400.30910.9320.00.00.7880.00.940.042.4430.01.3780.07.794.359
068.7320.06.93113.5210.8391.0530.02.30167.1899.31774.59300.2356.6690.7713.0734.778
070.9021.17481.3530.00.9020.010.240.02.5040.082.090.013.1410.895306.80.0
0816.730.00.00.7182.0690.00.00.0478.9410.00.01.5420.00.00.00.0
09476.620.018.2652.8550.00.00.00.00.00.00.00.02.260.00.00.0
10469.1620.04.345.3780.00.00.00.018.2650.00.00.01.9550.00.8990.0
1113.7857.175461.6666.7560.00.00.00.00.00.04.4060.8330.00.04.1291.249
121.7842.533.535.9410.03.3321.0682.7765.74431.3518.989414.1170.00.7392.525.579
130.7010.03.0993.72818.9593.0145.76210.21611.2311.7539.1234.085.96830.776222.52789.141
1444.81825.51926.1220.40220.159.8170.05.577132.06946.12638.50123.81724.71215.06923.63643.669
1587.52323.76153.50456.9630.65114.7276.56444.58920.51519.19322.5426.00821.15215.48124.63332.198
1655.115.70551.45537.58121.91518.3593.44929.4440.64918.10924.11824.36513.35433.22244.83768.342
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.609-0.971.06-0.5860.237-1.16-1.333-0.9110.359-1.4260.037-1.2590.259-1.1841.088-0.633
021.313-0.919-0.087-0.222-1.047-0.778-2.556-1.0461.717-0.897-0.247-0.929-0.941-1.102-0.591-0.697
032.129-1.025-0.107-1.01-0.231-1.096-2.611-0.9260.368-0.697-1.478-1.837-0.298-0.355-0.9-1.632
042.315-4.40.039-1.5520.604-4.4-3.295-4.40.206-3.292-1.681-1.865-0.165-4.4-1.85-2.325
05-0.149-1.9322.539-1.028-4.4-4.4-3.292-4.4-3.17-4.40.303-4.4-2.885-4.4-1.353-1.897
06-1.244-4.4-1.464-0.822-3.249-3.088-4.4-2.4650.759-1.1820.8632.251-1.5-3.306-2.213-1.812
07-3.2-3.0080.949-4.4-3.2-4.4-1.091-4.4-2.392-4.40.958-4.4-0.849-3.2052.273-4.4
08-0.614-4.4-4.4-3.353-2.555-4.4-4.4-4.42.718-4.4-4.4-2.797-4.4-4.4-4.4-4.4
092.713-4.4-0.528-2.278-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.48-4.4-4.4-4.4
102.697-4.4-1.901-1.702-4.4-4.4-4.4-4.4-0.528-4.4-4.4-4.4-2.603-4.4-3.201-4.4
11-0.803-1.4312.681-1.488-4.4-4.4-4.4-4.4-4.4-4.4-1.887-3.254-4.4-4.4-1.946-2.961
12-2.679-2.383-2.089-1.609-4.4-2.14-3.079-2.302-1.6410.003-0.492.573-4.4-3.334-2.387-1.668
13-3.369-4.4-2.205-2.039-0.492-2.23-1.638-1.093-1.002-2.693-1.202-1.9751.004-0.0151.9521.04
140.357-0.2-0.177-0.42-0.432-1.131-4.4-1.6681.4320.3850.206-0.268-0.232-0.716-0.2750.331
151.022-0.270.5330.595-0.019-0.739-1.5150.352-0.414-0.48-0.322-0.181-0.384-0.69-0.2350.03
160.562-0.6760.4940.182-0.35-0.523-2.11-0.0590.26-0.537-0.255-0.245-0.8340.060.3570.776