Transcription factor | RUNX3 (GeneCards) | ||||||||
Model | RUNX3_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | bhTGYGGYYdn | ||||||||
Best auROC (human) | 0.997 | ||||||||
Best auROC (mouse) | 0.972 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 27 | ||||||||
Aligned words | 498 | ||||||||
TF family | Runt-related factors {6.4.1} | ||||||||
TF subfamily | Runx3 (PEBP2alphaC, CBF-alpha3, AML-2) {6.4.1.0.3} | ||||||||
HGNC | HGNC:10473 | ||||||||
EntrezGene | GeneID:864 (SSTAR profile) | ||||||||
UniProt ID | RUNX3_HUMAN | ||||||||
UniProt AC | Q13761 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | RUNX3 expression | ||||||||
ReMap ChIP-seq dataset list | RUNX3 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 15.0 | 20.0 | 17.0 | 15.0 | 7.0 | 55.0 | 4.0 | 29.0 | 55.0 | 74.0 | 14.0 | 38.0 | 6.0 | 86.0 | 18.0 | 45.0 |
02 | 30.0 | 0.0 | 0.0 | 53.0 | 11.0 | 4.0 | 2.0 | 218.0 | 4.0 | 1.0 | 2.0 | 46.0 | 9.0 | 4.0 | 6.0 | 108.0 |
03 | 5.0 | 1.0 | 46.0 | 2.0 | 1.0 | 0.0 | 6.0 | 2.0 | 1.0 | 0.0 | 9.0 | 0.0 | 5.0 | 7.0 | 403.0 | 10.0 |
04 | 2.0 | 0.0 | 1.0 | 9.0 | 4.0 | 1.0 | 0.0 | 3.0 | 37.0 | 81.0 | 11.0 | 335.0 | 0.0 | 0.0 | 2.0 | 12.0 |
05 | 0.0 | 1.0 | 37.0 | 5.0 | 9.0 | 2.0 | 65.0 | 6.0 | 0.0 | 0.0 | 13.0 | 1.0 | 4.0 | 2.0 | 345.0 | 8.0 |
06 | 0.0 | 1.0 | 9.0 | 3.0 | 0.0 | 0.0 | 2.0 | 3.0 | 8.0 | 6.0 | 429.0 | 17.0 | 1.0 | 2.0 | 12.0 | 5.0 |
07 | 1.0 | 2.0 | 0.0 | 6.0 | 0.0 | 1.0 | 0.0 | 8.0 | 6.0 | 55.0 | 43.0 | 348.0 | 0.0 | 3.0 | 2.0 | 23.0 |
08 | 2.0 | 1.0 | 2.0 | 2.0 | 4.0 | 14.0 | 2.0 | 41.0 | 6.0 | 17.0 | 2.0 | 20.0 | 24.0 | 83.0 | 44.0 | 234.0 |
09 | 21.0 | 0.0 | 10.0 | 5.0 | 39.0 | 8.0 | 16.0 | 52.0 | 19.0 | 1.0 | 20.0 | 10.0 | 57.0 | 32.0 | 62.0 | 146.0 |
10 | 24.0 | 39.0 | 58.0 | 15.0 | 11.0 | 14.0 | 2.0 | 14.0 | 24.0 | 31.0 | 36.0 | 17.0 | 33.0 | 68.0 | 52.0 | 60.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.717 | -0.435 | -0.595 | -0.717 | -1.451 | 0.564 | -1.971 | -0.07 | 0.564 | 0.859 | -0.784 | 0.197 | -1.596 | 1.008 | -0.539 | 0.365 |
02 | -0.036 | -4.397 | -4.397 | 0.527 | -1.018 | -1.971 | -2.58 | 1.936 | -1.971 | -3.122 | -2.58 | 0.387 | -1.211 | -1.971 | -1.596 | 1.235 |
03 | -1.766 | -3.122 | 0.387 | -2.58 | -3.122 | -4.397 | -1.596 | -2.58 | -3.122 | -4.397 | -1.211 | -4.397 | -1.766 | -1.451 | 2.549 | -1.11 |
04 | -2.58 | -4.397 | -3.122 | -1.211 | -1.971 | -3.122 | -4.397 | -2.23 | 0.171 | 0.949 | -1.018 | 2.365 | -4.397 | -4.397 | -2.58 | -0.934 |
05 | -4.397 | -3.122 | 0.171 | -1.766 | -1.211 | -2.58 | 0.73 | -1.596 | -4.397 | -4.397 | -0.856 | -3.122 | -1.971 | -2.58 | 2.394 | -1.324 |
06 | -4.397 | -3.122 | -1.211 | -2.23 | -4.397 | -4.397 | -2.58 | -2.23 | -1.324 | -1.596 | 2.612 | -0.595 | -3.122 | -2.58 | -0.934 | -1.766 |
07 | -3.122 | -2.58 | -4.397 | -1.596 | -4.397 | -3.122 | -4.397 | -1.324 | -1.596 | 0.564 | 0.32 | 2.403 | -4.397 | -2.23 | -2.58 | -0.298 |
08 | -2.58 | -3.122 | -2.58 | -2.58 | -1.971 | -0.784 | -2.58 | 0.273 | -1.596 | -0.595 | -2.58 | -0.435 | -0.256 | 0.973 | 0.343 | 2.007 |
09 | -0.388 | -4.397 | -1.11 | -1.766 | 0.223 | -1.324 | -0.654 | 0.508 | -0.486 | -3.122 | -0.435 | -1.11 | 0.599 | 0.027 | 0.683 | 1.536 |
10 | -0.256 | 0.223 | 0.617 | -0.717 | -1.018 | -0.784 | -2.58 | -0.784 | -0.256 | -0.004 | 0.144 | -0.595 | 0.058 | 0.775 | 0.508 | 0.65 |