ALX1_MOUSE.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

Model

ALX1_MOUSE.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

12

Quality

B

Motif rank

0

Consensus

vTRATYGnATTA

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

33

TF family

Paired-related HD factors {3.1.3}

TF subfamily

MGI

EntrezGene

GeneID:216285
(SSTAR profile)

UniProt ID

UniProt AC

Q8C8B0
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.4381
0.0005	6.188834999999999
0.0001	7.62084

GTEx tissue expression atlas

Alx1 expression

Motifs in JASPAR

MA0854.1 (Alx1; Mus musculus)

PCM

	A	C	G	T
01	13.542	6.481	8.467	2.51
02	1.986	2.979	0.0	26.036
03	23.94	0.993	3.089	2.979
04	26.918	1.986	0.0	2.096
05	0.0	2.979	0.0	28.021
06	0.993	7.06	3.972	18.975
07	15.004	0.0	15.996	0.0
08	11.032	7.943	11.032	0.993
09	24.05	0.0	3.972	2.979
10	3.089	0.0	0.993	26.918
11	1.986	0.993	0.993	27.028
12	25.705	1.765	1.765	1.765

PWM

	A	C	G	T
01	0.515	-0.159	0.08	-0.938
02	-1.107	-0.808	-2.305	1.139
03	1.058	-1.537	-0.78	-0.808
04	1.171	-1.107	-2.305	-1.069
05	-2.305	-0.808	-2.305	1.21
06	-1.537	-0.083	-0.578	0.835
07	0.611	-2.305	0.672	-2.305
08	0.323	0.022	0.323	-1.537
09	1.062	-2.305	-0.578	-0.808
10	-0.78	-2.305	-1.537	1.171
11	-1.107	-1.537	-1.537	1.175
12	1.127	-1.188	-1.188	-1.188