ALX4_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

ALX4
(GeneCards)

Model

ALX4_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

HT-SELEX

Model release

HOCOMOCOv10

Model length

12

Quality

D

Motif rank

0

Consensus

hTAATTARATTA

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

23663

TF family

Paired-related HD factors {3.1.3}

TF subfamily

HGNC

EntrezGene

GeneID:60529
(SSTAR profile)

UniProt ID

UniProt AC

Q9H161
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	-0.47022
0.0005	1.48191
0.0001	5.282775

GTEx tissue expression atlas

ALX4 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0853.1 (Alx4; Mus musculus)

PCM

	A	C	G	T
01	3870.956	7295.084	3216.246	8840.919
02	112.456	37.827	23.615	23049.307
03	23128.357	3.974	19.442	71.432
04	23221.635	0.314	0.942	0.314
05	0.0	7.932	1.256	23214.017
06	7.734	1024.684	15.898	22174.89
07	18232.917	0.0	4990.288	0.0
08	13734.561	417.865	9046.751	24.028
09	22119.166	212.188	685.513	206.338
10	61.326	84.297	57.988	23019.594
11	357.555	231.862	89.808	22543.98
12	22765.935	114.877	126.148	216.245

PWM

	A	C	G	T
01	-0.405	0.228	-0.59	0.42
02	-3.922	-4.97	-5.404	1.378
03	1.382	-6.797	-5.578	-4.364
04	1.386	-7.628	-7.427	-7.628
05	-7.745	-6.321	-7.34	1.386
06	-6.34	-1.732	-5.754	1.34
07	1.144	-7.745	-0.151	-7.745
08	0.861	-2.626	0.443	-5.388
09	1.337	-3.298	-2.133	-3.325
10	-4.511	-4.203	-4.564	1.377
11	-2.781	-3.21	-4.142	1.356
12	1.366	-3.902	-3.81	-3.279