Model info
| Transcription factor | ALX4 (GeneCards) | ||||||||
| Model | ALX4_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATTARATTA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 23663 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | ALX {3.1.3.1} | ||||||||
| HGNC | HGNC:450 | ||||||||
| EntrezGene | GeneID:60529 (SSTAR profile) | ||||||||
| UniProt ID | ALX4_HUMAN | ||||||||
| UniProt AC | Q9H161 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ALX4 expression | ||||||||
| ReMap ChIP-seq dataset list | ALX4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3870.956 | 7295.084 | 3216.246 | 8840.919 |
| 02 | 112.456 | 37.827 | 23.615 | 23049.307 |
| 03 | 23128.357 | 3.974 | 19.442 | 71.432 |
| 04 | 23221.635 | 0.314 | 0.942 | 0.314 |
| 05 | 0.0 | 7.932 | 1.256 | 23214.017 |
| 06 | 7.734 | 1024.684 | 15.898 | 22174.89 |
| 07 | 18232.917 | 0.0 | 4990.288 | 0.0 |
| 08 | 13734.561 | 417.865 | 9046.751 | 24.028 |
| 09 | 22119.166 | 212.188 | 685.513 | 206.338 |
| 10 | 61.326 | 84.297 | 57.988 | 23019.594 |
| 11 | 357.555 | 231.862 | 89.808 | 22543.98 |
| 12 | 22765.935 | 114.877 | 126.148 | 216.245 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.405 | 0.228 | -0.59 | 0.42 |
| 02 | -3.922 | -4.97 | -5.404 | 1.378 |
| 03 | 1.382 | -6.797 | -5.578 | -4.364 |
| 04 | 1.386 | -7.628 | -7.427 | -7.628 |
| 05 | -7.745 | -6.321 | -7.34 | 1.386 |
| 06 | -6.34 | -1.732 | -5.754 | 1.34 |
| 07 | 1.144 | -7.745 | -0.151 | -7.745 |
| 08 | 0.861 | -2.626 | 0.443 | -5.388 |
| 09 | 1.337 | -3.298 | -2.133 | -3.325 |
| 10 | -4.511 | -4.203 | -4.564 | 1.377 |
| 11 | -2.781 | -3.21 | -4.142 | 1.356 |
| 12 | 1.366 | -3.902 | -3.81 | -3.279 |