We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorAR
(GeneCards)
ModelANDR_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
1
ConsensusdGnACWbTbWGTdCYb
Best auROC (human)0.97
Best auROC (mouse)0.991
Peak sets in benchmark (human)461
Peak sets in benchmark (mouse)57
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:644
EntrezGeneGeneID:367
(SSTAR profile)
UniProt IDANDR_HUMAN
UniProt ACP10275
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.59016
0.0005 5.53491
0.0001 7.47946
GTEx tissue expression atlas AR expression
ReMap ChIP-seq dataset list AR datasets
Motifs in JASPAR
PCM
ACGT
01181.012.0228.079.0
0254.013.0404.029.0
03186.0105.0112.097.0
04413.025.025.037.0
051.0466.015.018.0
06349.012.039.0100.0
0763.0115.0176.0146.0
080.00.0192.0308.0
0958.0178.0200.064.0
1073.033.07.0387.0
112.016.0481.01.0
1243.021.011.0425.0
13105.085.097.0213.0
1437.0403.03.057.0
1546.0206.07.0241.0
1671.0131.098.0200.0
PWM
ACGT
010.366-2.2340.595-0.452
02-0.823-2.1631.165-1.421
030.393-0.172-0.108-0.25
041.187-1.561-1.561-1.189
05-3.9031.307-2.034-1.868
061.019-2.234-1.138-0.22
07-0.673-0.0820.3390.154
08-4.4-4.40.4250.894
09-0.7540.350.465-0.658
10-0.529-1.298-2.6941.122
11-3.573-1.9751.338-3.903
12-1.044-1.725-2.3111.215
13-0.172-0.38-0.250.528
14-1.1891.162-3.325-0.771
15-0.9790.495-2.6940.651
16-0.5560.046-0.240.465