We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorAR
(GeneCards)
ModelANDR_HUMAN.H11MO.2.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
2
ConsensusnhbTGTKCYhdb
Best auROC (human)0.901
Best auROC (mouse)0.887
Peak sets in benchmark (human)461
Peak sets in benchmark (mouse)57
Aligned words500
TF familySteroid hormone receptors (NR3) {2.1.1}
TF subfamilyGR-like receptors (NR3C) {2.1.1.1}
HGNCHGNC:644
EntrezGeneGeneID:367
(SSTAR profile)
UniProt IDANDR_HUMAN
UniProt ACP10275
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.623315
0.0005 6.4930699999999995
0.0001 7.874385
GTEx tissue expression atlas AR expression
ReMap ChIP-seq dataset list AR datasets
Motifs in JASPAR
PCM
ACGT
0170.0162.0121.0147.0
02124.065.059.0252.0
0369.0195.0159.077.0
0423.08.01.0468.0
053.010.0485.02.0
065.06.01.0488.0
0727.060.094.0319.0
080.0492.03.05.0
0914.0203.02.0281.0
1086.0119.057.0238.0
1193.070.0135.0202.0
1261.0109.0121.0209.0
PWM
ACGT
01-0.570.256-0.0320.16
02-0.008-0.643-0.7370.695
03-0.5840.440.238-0.477
04-1.64-2.584-3.9031.311
05-3.325-2.3941.347-3.573
06-2.961-2.819-3.9031.353
07-1.489-0.721-0.2810.929
08-4.41.361-3.325-2.961
09-2.0960.48-3.5730.803
10-0.368-0.049-0.7710.638
11-0.291-0.570.0760.475
12-0.705-0.135-0.0320.509