Transcription factor | AR (GeneCards) | ||||||||
Model | ANDR_HUMAN.H11MO.2.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 2 | ||||||||
Consensus | nhbTGTKCYhdb | ||||||||
Best auROC (human) | 0.901 | ||||||||
Best auROC (mouse) | 0.887 | ||||||||
Peak sets in benchmark (human) | 461 | ||||||||
Peak sets in benchmark (mouse) | 57 | ||||||||
Aligned words | 500 | ||||||||
TF family | Steroid hormone receptors (NR3) {2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C) {2.1.1.1} | ||||||||
HGNC | HGNC:644 | ||||||||
EntrezGene | GeneID:367 (SSTAR profile) | ||||||||
UniProt ID | ANDR_HUMAN | ||||||||
UniProt AC | P10275 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | AR expression | ||||||||
ReMap ChIP-seq dataset list | AR datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 70.0 | 162.0 | 121.0 | 147.0 |
02 | 124.0 | 65.0 | 59.0 | 252.0 |
03 | 69.0 | 195.0 | 159.0 | 77.0 |
04 | 23.0 | 8.0 | 1.0 | 468.0 |
05 | 3.0 | 10.0 | 485.0 | 2.0 |
06 | 5.0 | 6.0 | 1.0 | 488.0 |
07 | 27.0 | 60.0 | 94.0 | 319.0 |
08 | 0.0 | 492.0 | 3.0 | 5.0 |
09 | 14.0 | 203.0 | 2.0 | 281.0 |
10 | 86.0 | 119.0 | 57.0 | 238.0 |
11 | 93.0 | 70.0 | 135.0 | 202.0 |
12 | 61.0 | 109.0 | 121.0 | 209.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.57 | 0.256 | -0.032 | 0.16 |
02 | -0.008 | -0.643 | -0.737 | 0.695 |
03 | -0.584 | 0.44 | 0.238 | -0.477 |
04 | -1.64 | -2.584 | -3.903 | 1.311 |
05 | -3.325 | -2.394 | 1.347 | -3.573 |
06 | -2.961 | -2.819 | -3.903 | 1.353 |
07 | -1.489 | -0.721 | -0.281 | 0.929 |
08 | -4.4 | 1.361 | -3.325 | -2.961 |
09 | -2.096 | 0.48 | -3.573 | 0.803 |
10 | -0.368 | -0.049 | -0.771 | 0.638 |
11 | -0.291 | -0.57 | 0.076 | 0.475 |
12 | -0.705 | -0.135 | -0.032 | 0.509 |