We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTFAP2A
(GeneCards)
ModelAP2A_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnhdSCCYGRGGSndn
Best auROC (human)0.961
Best auROC (mouse)0.956
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words500
TF familyAP-2 {1.3.1}
TF subfamilyAP-2alpha {1.3.1.0.1}
HGNCHGNC:11742
EntrezGeneGeneID:7020
(SSTAR profile)
UniProt IDAP2A_HUMAN
UniProt ACP05549
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.579060000000001
0.0005 9.86916
0.0001 14.441460000000001
GTEx tissue expression atlas TFAP2A expression
ReMap ChIP-seq dataset list TFAP2A datasets
Motifs in JASPAR
MA0003.1 (TFAP2A; Homo sapiens)
MA0003.2 (TFAP2A; Homo sapiens)
MA0003.3 (TFAP2A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0132.023.028.067.030.019.01.081.020.024.020.054.03.017.018.060.0
0219.07.038.021.025.017.016.025.016.09.028.014.048.035.0126.053.0
032.041.062.03.03.030.032.03.03.0161.039.05.03.027.079.04.0
042.09.00.00.02.0256.01.00.00.0212.00.00.01.013.00.01.0
051.03.01.00.02.0466.00.022.00.01.00.00.01.00.00.00.0
060.01.01.02.025.0105.012.0328.00.00.00.01.05.04.05.08.0
070.00.028.02.00.00.093.017.00.00.016.02.00.00.0293.046.0
080.00.00.00.00.00.00.00.0214.039.0172.05.037.01.024.05.0
0926.00.0225.00.05.00.034.01.037.00.0159.00.03.00.07.00.0
100.01.070.00.00.00.00.00.00.06.0415.04.00.00.00.01.0
110.00.00.00.03.02.02.00.017.0266.0198.04.01.01.03.00.0
122.015.01.03.094.053.043.079.016.0120.041.026.00.00.01.03.0
1363.07.024.018.0116.029.07.036.028.020.022.016.050.08.037.016.0
1465.037.070.085.09.014.011.030.020.011.021.038.015.016.024.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.029-0.296-0.1020.762-0.034-0.484-3.1210.951-0.433-0.254-0.4330.548-2.228-0.593-0.5370.652
02-0.484-1.4490.199-0.386-0.214-0.593-0.652-0.214-0.652-1.209-0.102-0.7820.4310.1181.3910.529
03-2.5780.2750.685-2.228-2.228-0.0340.029-2.228-2.2281.6350.225-1.764-2.228-0.1380.926-1.97
04-2.578-1.209-4.395-4.395-2.5782.098-3.121-4.395-4.3951.91-4.395-4.395-3.121-0.854-4.395-3.121
05-3.121-2.228-3.121-4.395-2.5782.697-4.395-0.34-4.395-3.121-4.395-4.395-3.121-4.395-4.395-4.395
06-4.395-3.121-3.121-2.578-0.2141.209-0.9322.346-4.395-4.395-4.395-3.121-1.764-1.97-1.764-1.322
07-4.395-4.395-0.102-2.578-4.395-4.3951.088-0.593-4.395-4.395-0.652-2.578-4.395-4.3952.2330.389
08-4.395-4.395-4.395-4.395-4.395-4.395-4.395-4.3951.9190.2251.701-1.7640.173-3.121-0.254-1.764
09-0.176-4.3951.969-4.395-1.764-4.3950.089-3.1210.173-4.3951.623-4.395-2.228-4.395-1.449-4.395
10-4.395-3.1210.806-4.395-4.395-4.395-4.395-4.395-4.395-1.5942.581-1.97-4.395-4.395-4.395-3.121
11-4.395-4.395-4.395-4.395-2.228-2.578-2.578-4.395-0.5932.1371.842-1.97-3.121-3.121-2.228-4.395
12-2.578-0.715-3.121-2.2281.0990.5290.3220.926-0.6521.3420.275-0.176-4.395-4.395-3.121-2.228
130.701-1.449-0.254-0.5371.309-0.068-1.4490.146-0.102-0.433-0.34-0.6520.471-1.3220.173-0.652
140.7320.1730.8060.999-1.209-0.782-1.016-0.034-0.433-1.016-0.3860.199-0.715-0.652-0.254-0.002