Transcription factor | TFAP2A (GeneCards) | ||||||||
Model | AP2A_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhdSCCYGRGGSndn | ||||||||
Best auROC (human) | 0.961 | ||||||||
Best auROC (mouse) | 0.956 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 13 | ||||||||
Aligned words | 500 | ||||||||
TF family | AP-2 {1.3.1} | ||||||||
TF subfamily | AP-2alpha {1.3.1.0.1} | ||||||||
HGNC | HGNC:11742 | ||||||||
EntrezGene | GeneID:7020 (SSTAR profile) | ||||||||
UniProt ID | AP2A_HUMAN | ||||||||
UniProt AC | P05549 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | TFAP2A expression | ||||||||
ReMap ChIP-seq dataset list | TFAP2A datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 32.0 | 23.0 | 28.0 | 67.0 | 30.0 | 19.0 | 1.0 | 81.0 | 20.0 | 24.0 | 20.0 | 54.0 | 3.0 | 17.0 | 18.0 | 60.0 |
02 | 19.0 | 7.0 | 38.0 | 21.0 | 25.0 | 17.0 | 16.0 | 25.0 | 16.0 | 9.0 | 28.0 | 14.0 | 48.0 | 35.0 | 126.0 | 53.0 |
03 | 2.0 | 41.0 | 62.0 | 3.0 | 3.0 | 30.0 | 32.0 | 3.0 | 3.0 | 161.0 | 39.0 | 5.0 | 3.0 | 27.0 | 79.0 | 4.0 |
04 | 2.0 | 9.0 | 0.0 | 0.0 | 2.0 | 256.0 | 1.0 | 0.0 | 0.0 | 212.0 | 0.0 | 0.0 | 1.0 | 13.0 | 0.0 | 1.0 |
05 | 1.0 | 3.0 | 1.0 | 0.0 | 2.0 | 466.0 | 0.0 | 22.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 1.0 | 1.0 | 2.0 | 25.0 | 105.0 | 12.0 | 328.0 | 0.0 | 0.0 | 0.0 | 1.0 | 5.0 | 4.0 | 5.0 | 8.0 |
07 | 0.0 | 0.0 | 28.0 | 2.0 | 0.0 | 0.0 | 93.0 | 17.0 | 0.0 | 0.0 | 16.0 | 2.0 | 0.0 | 0.0 | 293.0 | 46.0 |
08 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 214.0 | 39.0 | 172.0 | 5.0 | 37.0 | 1.0 | 24.0 | 5.0 |
09 | 26.0 | 0.0 | 225.0 | 0.0 | 5.0 | 0.0 | 34.0 | 1.0 | 37.0 | 0.0 | 159.0 | 0.0 | 3.0 | 0.0 | 7.0 | 0.0 |
10 | 0.0 | 1.0 | 70.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 6.0 | 415.0 | 4.0 | 0.0 | 0.0 | 0.0 | 1.0 |
11 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 2.0 | 2.0 | 0.0 | 17.0 | 266.0 | 198.0 | 4.0 | 1.0 | 1.0 | 3.0 | 0.0 |
12 | 2.0 | 15.0 | 1.0 | 3.0 | 94.0 | 53.0 | 43.0 | 79.0 | 16.0 | 120.0 | 41.0 | 26.0 | 0.0 | 0.0 | 1.0 | 3.0 |
13 | 63.0 | 7.0 | 24.0 | 18.0 | 116.0 | 29.0 | 7.0 | 36.0 | 28.0 | 20.0 | 22.0 | 16.0 | 50.0 | 8.0 | 37.0 | 16.0 |
14 | 65.0 | 37.0 | 70.0 | 85.0 | 9.0 | 14.0 | 11.0 | 30.0 | 20.0 | 11.0 | 21.0 | 38.0 | 15.0 | 16.0 | 24.0 | 31.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.029 | -0.296 | -0.102 | 0.762 | -0.034 | -0.484 | -3.121 | 0.951 | -0.433 | -0.254 | -0.433 | 0.548 | -2.228 | -0.593 | -0.537 | 0.652 |
02 | -0.484 | -1.449 | 0.199 | -0.386 | -0.214 | -0.593 | -0.652 | -0.214 | -0.652 | -1.209 | -0.102 | -0.782 | 0.431 | 0.118 | 1.391 | 0.529 |
03 | -2.578 | 0.275 | 0.685 | -2.228 | -2.228 | -0.034 | 0.029 | -2.228 | -2.228 | 1.635 | 0.225 | -1.764 | -2.228 | -0.138 | 0.926 | -1.97 |
04 | -2.578 | -1.209 | -4.395 | -4.395 | -2.578 | 2.098 | -3.121 | -4.395 | -4.395 | 1.91 | -4.395 | -4.395 | -3.121 | -0.854 | -4.395 | -3.121 |
05 | -3.121 | -2.228 | -3.121 | -4.395 | -2.578 | 2.697 | -4.395 | -0.34 | -4.395 | -3.121 | -4.395 | -4.395 | -3.121 | -4.395 | -4.395 | -4.395 |
06 | -4.395 | -3.121 | -3.121 | -2.578 | -0.214 | 1.209 | -0.932 | 2.346 | -4.395 | -4.395 | -4.395 | -3.121 | -1.764 | -1.97 | -1.764 | -1.322 |
07 | -4.395 | -4.395 | -0.102 | -2.578 | -4.395 | -4.395 | 1.088 | -0.593 | -4.395 | -4.395 | -0.652 | -2.578 | -4.395 | -4.395 | 2.233 | 0.389 |
08 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | 1.919 | 0.225 | 1.701 | -1.764 | 0.173 | -3.121 | -0.254 | -1.764 |
09 | -0.176 | -4.395 | 1.969 | -4.395 | -1.764 | -4.395 | 0.089 | -3.121 | 0.173 | -4.395 | 1.623 | -4.395 | -2.228 | -4.395 | -1.449 | -4.395 |
10 | -4.395 | -3.121 | 0.806 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | -4.395 | -1.594 | 2.581 | -1.97 | -4.395 | -4.395 | -4.395 | -3.121 |
11 | -4.395 | -4.395 | -4.395 | -4.395 | -2.228 | -2.578 | -2.578 | -4.395 | -0.593 | 2.137 | 1.842 | -1.97 | -3.121 | -3.121 | -2.228 | -4.395 |
12 | -2.578 | -0.715 | -3.121 | -2.228 | 1.099 | 0.529 | 0.322 | 0.926 | -0.652 | 1.342 | 0.275 | -0.176 | -4.395 | -4.395 | -3.121 | -2.228 |
13 | 0.701 | -1.449 | -0.254 | -0.537 | 1.309 | -0.068 | -1.449 | 0.146 | -0.102 | -0.433 | -0.34 | -0.652 | 0.471 | -1.322 | 0.173 | -0.652 |
14 | 0.732 | 0.173 | 0.806 | 0.999 | -1.209 | -0.782 | -1.016 | -0.034 | -0.433 | -1.016 | -0.386 | 0.199 | -0.715 | -0.652 | -0.254 | -0.002 |