We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTFAP2A
(GeneCards)
ModelAP2A_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length15
Quality
A
Motif rank
0
ConsensusdddSCCTGRGGShdd
Best auROC (human)0.956
Best auROC (mouse)0.937
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words500
TF familyAP-2 {1.3.1}
TF subfamilyAP-2alpha {1.3.1.0.1}
HGNCHGNC:11742
EntrezGeneGeneID:7020
(SSTAR profile)
UniProt IDAP2A_HUMAN
UniProt ACP05549
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2035599999999995
0.0005 5.399509999999999
0.0001 7.709960000000001
GTEx tissue expression atlas TFAP2A expression
ReMap ChIP-seq dataset list TFAP2A datasets
Motifs in JASPAR
PCM
ACGT
01208.07892.68296.563102.676
02115.55945.5667.335271.546
0388.3847.199235.113129.307
045.417260.302215.72518.556
050.0500.00.00.0
060.0450.4870.049.513
0725.46955.6536.392412.486
080.9190.0398.283100.797
09267.66719.294204.6188.421
1071.0790.0428.0430.878
110.00.0500.00.0
1223.932278.059189.9998.009
13154.127190.81845.87109.185
14256.52146.71102.12994.64
15119.2674.447104.199202.095
PWM
ACGT
010.505-0.295-0.255-0.194
02-0.078-0.988-0.6080.769
03-0.342-0.9540.6260.033
04-2.8990.7270.541-1.839
05-4.41.377-4.4-4.4
06-4.41.273-4.4-0.908
07-1.544-0.794-2.7681.185
08-3.935-4.41.15-0.212
090.755-1.8030.488-2.541
10-0.555-4.41.222-3.952
11-4.4-4.41.377-4.4
12-1.6030.7930.414-2.583
130.2070.419-0.982-0.133
140.713-0.964-0.199-0.274
15-0.046-0.51-0.180.476