Model info
| Transcription factor | TFAP2A (GeneCards) | ||||||||
| Model | AP2A_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dddSCCTGRGGShdd | ||||||||
| Best auROC (human) | 0.956 | ||||||||
| Best auROC (mouse) | 0.937 | ||||||||
| Peak sets in benchmark (human) | 13 | ||||||||
| Peak sets in benchmark (mouse) | 13 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | AP-2 {1.3.1} | ||||||||
| TF subfamily | AP-2alpha {1.3.1.0.1} | ||||||||
| HGNC | HGNC:11742 | ||||||||
| EntrezGene | GeneID:7020 (SSTAR profile) | ||||||||
| UniProt ID | AP2A_HUMAN | ||||||||
| UniProt AC | P05549 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TFAP2A expression | ||||||||
| ReMap ChIP-seq dataset list | TFAP2A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 208.078 | 92.682 | 96.563 | 102.676 |
| 02 | 115.559 | 45.56 | 67.335 | 271.546 |
| 03 | 88.38 | 47.199 | 235.113 | 129.307 |
| 04 | 5.417 | 260.302 | 215.725 | 18.556 |
| 05 | 0.0 | 500.0 | 0.0 | 0.0 |
| 06 | 0.0 | 450.487 | 0.0 | 49.513 |
| 07 | 25.469 | 55.653 | 6.392 | 412.486 |
| 08 | 0.919 | 0.0 | 398.283 | 100.797 |
| 09 | 267.667 | 19.294 | 204.618 | 8.421 |
| 10 | 71.079 | 0.0 | 428.043 | 0.878 |
| 11 | 0.0 | 0.0 | 500.0 | 0.0 |
| 12 | 23.932 | 278.059 | 189.999 | 8.009 |
| 13 | 154.127 | 190.818 | 45.87 | 109.185 |
| 14 | 256.521 | 46.71 | 102.129 | 94.64 |
| 15 | 119.26 | 74.447 | 104.199 | 202.095 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.505 | -0.295 | -0.255 | -0.194 |
| 02 | -0.078 | -0.988 | -0.608 | 0.769 |
| 03 | -0.342 | -0.954 | 0.626 | 0.033 |
| 04 | -2.899 | 0.727 | 0.541 | -1.839 |
| 05 | -4.4 | 1.377 | -4.4 | -4.4 |
| 06 | -4.4 | 1.273 | -4.4 | -0.908 |
| 07 | -1.544 | -0.794 | -2.768 | 1.185 |
| 08 | -3.935 | -4.4 | 1.15 | -0.212 |
| 09 | 0.755 | -1.803 | 0.488 | -2.541 |
| 10 | -0.555 | -4.4 | 1.222 | -3.952 |
| 11 | -4.4 | -4.4 | 1.377 | -4.4 |
| 12 | -1.603 | 0.793 | 0.414 | -2.583 |
| 13 | 0.207 | 0.419 | -0.982 | -0.133 |
| 14 | 0.713 | -0.964 | -0.199 | -0.274 |
| 15 | -0.046 | -0.51 | -0.18 | 0.476 |