We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTfap2a
ModelAP2A_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnvbdSCCYGRGGCnvn
Best auROC (human)0.954
Best auROC (mouse)0.964
Peak sets in benchmark (human)13
Peak sets in benchmark (mouse)13
Aligned words501
TF familyAP-2 {1.3.1}
TF subfamilyAP-2alpha {1.3.1.0.1}
MGIMGI:104671
EntrezGeneGeneID:21418
(SSTAR profile)
UniProt IDAP2A_MOUSE
UniProt ACP34056
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.85771
0.0005 7.38396
0.0001 12.91986
GTEx tissue expression atlas Tfap2a expression
Motifs in JASPAR
MA0003.1 (TFAP2A; Homo sapiens)
MA0003.2 (TFAP2A; Homo sapiens)
MA0003.3 (TFAP2A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0161.013.032.011.079.040.029.030.042.022.023.011.015.028.043.021.0
0242.040.050.065.016.017.09.061.021.029.026.051.07.011.09.046.0
0317.08.050.011.025.019.026.027.022.025.032.015.054.023.0115.031.0
043.027.086.02.00.026.048.01.01.0166.052.04.00.09.075.00.0
050.03.01.00.00.0228.00.00.00.0261.00.00.00.07.00.00.0
060.00.00.00.00.0485.00.014.01.00.00.00.00.00.00.00.0
070.00.00.01.010.0117.032.0326.00.00.00.00.02.01.04.07.0
080.00.012.00.09.00.0109.00.01.00.035.00.028.00.0305.01.0
0918.01.019.00.00.00.00.00.0253.048.0160.00.00.00.01.00.0
1012.00.0259.00.03.00.046.00.018.00.0162.00.00.00.00.00.0
110.00.033.00.00.00.00.00.00.00.0466.01.00.00.00.00.0
120.00.00.00.00.00.00.00.04.0359.0133.03.00.01.00.00.0
131.02.00.01.080.065.094.0121.015.084.019.015.00.01.01.01.0
1430.014.042.010.080.015.018.039.024.031.040.019.043.024.060.011.0
1536.045.051.045.015.025.06.038.025.040.048.047.05.020.023.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.663-0.860.023-1.0220.920.244-0.074-0.040.293-0.346-0.302-1.022-0.721-0.1080.316-0.392
020.2930.2440.4650.726-0.658-0.599-1.2150.663-0.392-0.074-0.1810.485-1.454-1.022-1.2150.383
03-0.599-1.3280.465-1.022-0.22-0.49-0.181-0.144-0.346-0.220.023-0.7210.542-0.3021.294-0.008
04-2.234-0.1441.004-2.584-4.4-0.1810.425-3.126-3.1261.660.504-1.975-4.4-1.2150.868-4.4
05-4.4-2.234-3.126-4.4-4.41.977-4.4-4.4-4.42.112-4.4-4.4-4.4-1.454-4.4-4.4
06-4.4-4.4-4.4-4.4-4.42.731-4.4-0.788-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-4.4-4.4-4.4-3.126-1.1141.3110.0232.334-4.4-4.4-4.4-4.4-2.584-3.126-1.975-1.454
08-4.4-4.4-0.938-4.4-1.215-4.41.241-4.4-3.126-4.40.112-4.4-0.108-4.42.267-3.126
09-0.543-3.126-0.49-4.4-4.4-4.4-4.4-4.42.0810.4251.623-4.4-4.4-4.4-3.126-4.4
10-0.938-4.42.104-4.4-2.234-4.40.383-4.4-0.543-4.41.636-4.4-4.4-4.4-4.4-4.4
11-4.4-4.40.054-4.4-4.4-4.4-4.4-4.4-4.4-4.42.691-3.126-4.4-4.4-4.4-4.4
12-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.9752.431.439-2.234-4.4-3.126-4.4-4.4
13-3.126-2.584-4.4-3.1260.9320.7261.0931.345-0.7210.981-0.49-0.721-4.4-3.126-3.126-3.126
14-0.04-0.7880.293-1.1140.932-0.721-0.5430.219-0.26-0.0080.244-0.490.316-0.260.646-1.022
150.140.3610.4850.361-0.721-0.22-1.60.193-0.220.2440.4250.404-1.77-0.439-0.302-0.008