Transcription factor | Tfap2a | ||||||||
Model | AP2A_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 16 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvbdSCCYGRGGCnvn | ||||||||
Best auROC (human) | 0.954 | ||||||||
Best auROC (mouse) | 0.964 | ||||||||
Peak sets in benchmark (human) | 13 | ||||||||
Peak sets in benchmark (mouse) | 13 | ||||||||
Aligned words | 501 | ||||||||
TF family | AP-2 {1.3.1} | ||||||||
TF subfamily | AP-2alpha {1.3.1.0.1} | ||||||||
MGI | MGI:104671 | ||||||||
EntrezGene | GeneID:21418 (SSTAR profile) | ||||||||
UniProt ID | AP2A_MOUSE | ||||||||
UniProt AC | P34056 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tfap2a expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 61.0 | 13.0 | 32.0 | 11.0 | 79.0 | 40.0 | 29.0 | 30.0 | 42.0 | 22.0 | 23.0 | 11.0 | 15.0 | 28.0 | 43.0 | 21.0 |
02 | 42.0 | 40.0 | 50.0 | 65.0 | 16.0 | 17.0 | 9.0 | 61.0 | 21.0 | 29.0 | 26.0 | 51.0 | 7.0 | 11.0 | 9.0 | 46.0 |
03 | 17.0 | 8.0 | 50.0 | 11.0 | 25.0 | 19.0 | 26.0 | 27.0 | 22.0 | 25.0 | 32.0 | 15.0 | 54.0 | 23.0 | 115.0 | 31.0 |
04 | 3.0 | 27.0 | 86.0 | 2.0 | 0.0 | 26.0 | 48.0 | 1.0 | 1.0 | 166.0 | 52.0 | 4.0 | 0.0 | 9.0 | 75.0 | 0.0 |
05 | 0.0 | 3.0 | 1.0 | 0.0 | 0.0 | 228.0 | 0.0 | 0.0 | 0.0 | 261.0 | 0.0 | 0.0 | 0.0 | 7.0 | 0.0 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 485.0 | 0.0 | 14.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.0 | 0.0 | 1.0 | 10.0 | 117.0 | 32.0 | 326.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 1.0 | 4.0 | 7.0 |
08 | 0.0 | 0.0 | 12.0 | 0.0 | 9.0 | 0.0 | 109.0 | 0.0 | 1.0 | 0.0 | 35.0 | 0.0 | 28.0 | 0.0 | 305.0 | 1.0 |
09 | 18.0 | 1.0 | 19.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 253.0 | 48.0 | 160.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
10 | 12.0 | 0.0 | 259.0 | 0.0 | 3.0 | 0.0 | 46.0 | 0.0 | 18.0 | 0.0 | 162.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
11 | 0.0 | 0.0 | 33.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 466.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
12 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 359.0 | 133.0 | 3.0 | 0.0 | 1.0 | 0.0 | 0.0 |
13 | 1.0 | 2.0 | 0.0 | 1.0 | 80.0 | 65.0 | 94.0 | 121.0 | 15.0 | 84.0 | 19.0 | 15.0 | 0.0 | 1.0 | 1.0 | 1.0 |
14 | 30.0 | 14.0 | 42.0 | 10.0 | 80.0 | 15.0 | 18.0 | 39.0 | 24.0 | 31.0 | 40.0 | 19.0 | 43.0 | 24.0 | 60.0 | 11.0 |
15 | 36.0 | 45.0 | 51.0 | 45.0 | 15.0 | 25.0 | 6.0 | 38.0 | 25.0 | 40.0 | 48.0 | 47.0 | 5.0 | 20.0 | 23.0 | 31.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.663 | -0.86 | 0.023 | -1.022 | 0.92 | 0.244 | -0.074 | -0.04 | 0.293 | -0.346 | -0.302 | -1.022 | -0.721 | -0.108 | 0.316 | -0.392 |
02 | 0.293 | 0.244 | 0.465 | 0.726 | -0.658 | -0.599 | -1.215 | 0.663 | -0.392 | -0.074 | -0.181 | 0.485 | -1.454 | -1.022 | -1.215 | 0.383 |
03 | -0.599 | -1.328 | 0.465 | -1.022 | -0.22 | -0.49 | -0.181 | -0.144 | -0.346 | -0.22 | 0.023 | -0.721 | 0.542 | -0.302 | 1.294 | -0.008 |
04 | -2.234 | -0.144 | 1.004 | -2.584 | -4.4 | -0.181 | 0.425 | -3.126 | -3.126 | 1.66 | 0.504 | -1.975 | -4.4 | -1.215 | 0.868 | -4.4 |
05 | -4.4 | -2.234 | -3.126 | -4.4 | -4.4 | 1.977 | -4.4 | -4.4 | -4.4 | 2.112 | -4.4 | -4.4 | -4.4 | -1.454 | -4.4 | -4.4 |
06 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.731 | -4.4 | -0.788 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
07 | -4.4 | -4.4 | -4.4 | -3.126 | -1.114 | 1.311 | 0.023 | 2.334 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | -3.126 | -1.975 | -1.454 |
08 | -4.4 | -4.4 | -0.938 | -4.4 | -1.215 | -4.4 | 1.241 | -4.4 | -3.126 | -4.4 | 0.112 | -4.4 | -0.108 | -4.4 | 2.267 | -3.126 |
09 | -0.543 | -3.126 | -0.49 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.081 | 0.425 | 1.623 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 |
10 | -0.938 | -4.4 | 2.104 | -4.4 | -2.234 | -4.4 | 0.383 | -4.4 | -0.543 | -4.4 | 1.636 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
11 | -4.4 | -4.4 | 0.054 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.691 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 |
12 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -1.975 | 2.43 | 1.439 | -2.234 | -4.4 | -3.126 | -4.4 | -4.4 |
13 | -3.126 | -2.584 | -4.4 | -3.126 | 0.932 | 0.726 | 1.093 | 1.345 | -0.721 | 0.981 | -0.49 | -0.721 | -4.4 | -3.126 | -3.126 | -3.126 |
14 | -0.04 | -0.788 | 0.293 | -1.114 | 0.932 | -0.721 | -0.543 | 0.219 | -0.26 | -0.008 | 0.244 | -0.49 | 0.316 | -0.26 | 0.646 | -1.022 |
15 | 0.14 | 0.361 | 0.485 | 0.361 | -0.721 | -0.22 | -1.6 | 0.193 | -0.22 | 0.244 | 0.425 | 0.404 | -1.77 | -0.439 | -0.302 | -0.008 |