AP2A_MOUSE.H11MO.0.A motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

Model

AP2A_MOUSE.H11MO.0.A

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

12

Quality

A

Motif rank

0

Consensus

vbdSCCYGRGGC

Best auROC (human)

0.939

Best auROC (mouse)

0.955

Peak sets in benchmark (human)

13

Peak sets in benchmark (mouse)

13

Aligned words

500

TF family

AP-2 {1.3.1}

TF subfamily

AP-2alpha {1.3.1.0.1}

MGI

EntrezGene

GeneID:21418
(SSTAR profile)

UniProt ID

UniProt AC

P34056
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.0766150000000003
0.0005	4.268915
0.0001	6.69731

GTEx tissue expression atlas

Tfap2a expression

Motifs in JASPAR

MA0003.1 (TFAP2A; Homo sapiens)

MA0003.2 (TFAP2A; Homo sapiens)

MA0003.3 (TFAP2A; Homo sapiens)

PCM

	A	C	G	T
01	203.0	103.0	117.0	77.0
02	88.0	98.0	96.0	218.0
03	114.0	73.0	222.0	91.0
04	2.0	233.0	257.0	8.0
05	1.0	498.0	1.0	0.0
06	0.0	487.0	0.0	13.0
07	13.0	106.0	36.0	345.0
08	39.0	0.0	459.0	2.0
09	271.0	48.0	179.0	2.0
10	31.0	0.0	468.0	1.0
11	0.0	0.0	500.0	0.0
12	7.0	360.0	130.0	3.0

PWM

	A	C	G	T
01	0.48	-0.191	-0.065	-0.477
02	-0.346	-0.24	-0.26	0.551
03	-0.091	-0.529	0.569	-0.313
04	-3.573	0.617	0.714	-2.584
05	-3.903	1.373	-3.903	-4.4
06	-4.4	1.351	-4.4	-2.163
07	-2.163	-0.163	-1.215	1.007
08	-1.138	-4.4	1.292	-3.573
09	0.767	-0.938	0.355	-3.573
10	-1.358	-4.4	1.311	-3.903
11	-4.4	-4.4	1.377	-4.4
12	-2.694	1.05	0.039	-3.325