Model info
| Transcription factor | TFAP2B (GeneCards) | ||||||||
| Model | AP2B_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | GSCYGRGGRv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 30 | ||||||||
| TF family | AP-2 {1.3.1} | ||||||||
| TF subfamily | AP-2beta {1.3.1.0.2} | ||||||||
| HGNC | HGNC:11743 | ||||||||
| EntrezGene | GeneID:7021 (SSTAR profile) | ||||||||
| UniProt ID | AP2B_HUMAN | ||||||||
| UniProt AC | Q92481 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TFAP2B expression | ||||||||
| ReMap ChIP-seq dataset list | TFAP2B datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.103 | 0.0 | 21.843 | 4.964 |
| 02 | 0.0 | 18.093 | 6.84 | 2.979 |
| 03 | 0.0 | 26.918 | 0.0 | 0.993 |
| 04 | 3.199 | 15.996 | 0.0 | 8.715 |
| 05 | 2.096 | 0.993 | 24.822 | 0.0 |
| 06 | 9.157 | 8.826 | 9.929 | 0.0 |
| 07 | 1.986 | 0.993 | 23.829 | 1.103 |
| 08 | 0.0 | 0.0 | 27.911 | 0.0 |
| 09 | 5.323 | 3.448 | 18.892 | 0.248 |
| 10 | 6.206 | 12.494 | 7.088 | 2.124 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.395 | -2.239 | 1.066 | -0.298 |
| 02 | -2.239 | 0.885 | -0.018 | -0.718 |
| 03 | -2.239 | 1.268 | -2.239 | -1.454 |
| 04 | -0.661 | 0.768 | -2.239 | 0.201 |
| 05 | -0.981 | -1.454 | 1.189 | -2.239 |
| 06 | 0.246 | 0.212 | 0.321 | -2.239 |
| 07 | -1.019 | -1.454 | 1.15 | -1.395 |
| 08 | -2.239 | -2.239 | 1.303 | -2.239 |
| 09 | -0.238 | -0.602 | 0.926 | -1.978 |
| 10 | -0.104 | 0.534 | 0.014 | -0.972 |