We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTFAP2C
(GeneCards)
ModelAP2C_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length14
Quality
A
Motif rank
0
ConsensusvddSCCTGRGGShv
Best auROC (human)0.95
Best auROC (mouse)0.941
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)6
Aligned words501
TF familyAP-2 {1.3.1}
TF subfamilyAP-2gamma {1.3.1.0.3}
HGNCHGNC:11744
EntrezGeneGeneID:7022
(SSTAR profile)
UniProt IDAP2C_HUMAN
UniProt ACQ92754
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.55351
0.0005 4.74596
0.0001 7.15906
GTEx tissue expression atlas TFAP2C expression
ReMap ChIP-seq dataset list TFAP2C datasets
Motifs in JASPAR
MA0524.1 (TFAP2C; Homo sapiens)
MA0524.2 (TFAP2C; Homo sapiens)
PCM
ACGT
01193.614100.515134.78371.088
0298.03761.79983.2256.963
0392.29849.886259.21598.601
044.767253.52235.9465.767
051.902494.1423.9570.0
060.934475.9111.17221.982
0725.00865.93312.689396.371
0817.6820.0458.60423.714
09277.51912.699207.9191.863
1036.720.0462.2940.985
110.00.0499.0580.942
1214.466309.124170.5095.902
13156.963175.7748.576118.691
14214.13885.26120.83479.768
PWM
ACGT
010.433-0.2150.074-0.555
02-0.24-0.692-0.4010.714
03-0.299-0.90.723-0.234
04-2.9970.7010.63-2.85
05-3.6011.365-3.134-4.4
06-3.9291.328-3.838-1.682
07-1.561-0.629-2.1841.146
08-1.884-4.41.291-1.611
090.791-2.1840.504-3.612
10-1.196-4.41.299-3.909
11-4.4-4.41.375-3.926
12-2.0670.8980.307-2.832
130.2250.337-0.926-0.051
140.533-0.377-0.033-0.442