Check the newest release v12
Model info
Transcription factorTfap2c
ModelAP2C_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusbdSCCYCRGGShn
Best auROC (human)0.939
Best auROC (mouse)0.956
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)6
Aligned words500
TF familyAP-2 {1.3.1}
TF subfamilyAP-2gamma {1.3.1.0.3}
MGIMGI:106032
EntrezGeneGeneID:21420
(SSTAR profile)
UniProt IDAP2C_MOUSE
UniProt ACQ61312
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.48911
0.0005 4.63101
0.0001 7.05012
GTEx tissue expression atlas Tfap2c expression
Motifs in JASPAR
MA0524.1 (TFAP2C; Homo sapiens)
MA0524.2 (TFAP2C; Homo sapiens)
PCM
ACGT
0177.0153.081.0189.0
02132.066.0217.085.0
034.0191.0288.017.0
040.0497.01.02.0
051.0411.01.087.0
060.0213.063.0224.0
071.0442.00.057.0
08334.05.0140.021.0
095.00.0495.00.0
100.00.0496.04.0
119.0276.0212.03.0
1284.0207.081.0128.0
13179.0108.0122.091.0
PWM
ACGT
01-0.4770.2-0.4270.409
020.054-0.6280.546-0.38
03-3.1260.420.828-1.92
04-4.41.371-3.903-3.573
05-3.9031.182-3.903-0.357
06-4.40.528-0.6730.578
07-3.9031.254-4.4-0.771
080.975-2.9610.112-1.725
09-2.961-4.41.367-4.4
10-4.4-4.41.369-3.126
11-2.4840.7850.523-3.325
12-0.3920.5-0.4270.023
130.355-0.144-0.024-0.313