AP2D_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

TFAP2D
(GeneCards)

Model

AP2D_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

14

Quality

D

Motif rank

0

Consensus

nGbCCGRGGCnCGY

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

5

TF family

AP-2 {1.3.1}

TF subfamily

AP-2delta {1.3.1.0.4}

HGNC

EntrezGene

GeneID:83741
(SSTAR profile)

UniProt ID

UniProt AC

Q7Z6R9
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.1625199999999998
0.0005	3.88631
0.0001	5.38938

GTEx tissue expression atlas

TFAP2D expression

ReMap ChIP-seq dataset list

TFAP2D datasets

Motifs in JASPAR

PCM

	A	C	G	T
01	1.163	2.442	1.163	0.233
02	0.0	0.0	5.0	0.0
03	0.0	3.14	0.93	0.93
04	0.0	5.0	0.0	0.0
05	0.0	3.023	0.0	1.977
06	0.0	0.0	5.0	0.0
07	1.977	1.163	1.86	0.0
08	0.0	0.0	5.0	0.0
09	0.0	0.0	5.0	0.0
10	0.0	4.07	0.93	0.0
11	0.93	1.163	1.977	0.93
12	0.0	4.07	0.93	0.0
13	0.0	0.93	4.07	0.0
14	0.233	1.163	0.233	3.372

PWM

	A	C	G	T
01	-0.054	0.543	-0.054	-0.956
02	-1.413	-1.413	1.185	-1.413
03	-1.413	0.762	-0.215	-0.215
04	-1.413	1.185	-1.413	-1.413
05	-1.413	0.729	-1.413	0.365
06	-1.413	-1.413	1.185	-1.413
07	0.365	-0.054	0.314	-1.413
08	-1.413	-1.413	1.185	-1.413
09	-1.413	-1.413	1.185	-1.413
10	-1.413	0.996	-0.215	-1.413
11	-0.215	-0.054	0.365	-0.215
12	-1.413	0.996	-0.215	-1.413
13	-1.413	-0.215	0.996	-1.413
14	-0.956	-0.054	-0.956	0.826