Model info
| Transcription factor | ARID3A (GeneCards) | ||||||||
| Model | ARI3A_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 22 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dWTTAAWYvRdWWYAAAWYWWW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 44 | ||||||||
| TF family | ARID-related factors {3.7.1} | ||||||||
| TF subfamily | ARID3 {3.7.1.3} | ||||||||
| HGNC | HGNC:3031 | ||||||||
| EntrezGene | GeneID:1820 (SSTAR profile) | ||||||||
| UniProt ID | ARI3A_HUMAN | ||||||||
| UniProt AC | Q99856 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ARID3A expression | ||||||||
| ReMap ChIP-seq dataset list | ARID3A datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.247 | 4.252 | 14.385 | 8.266 |
| 02 | 30.103 | 4.014 | 0.0 | 10.034 |
| 03 | 4.968 | 0.0 | 0.0 | 39.183 |
| 04 | 6.974 | 0.0 | 0.0 | 37.176 |
| 05 | 42.144 | 2.007 | 0.0 | 0.0 |
| 06 | 41.19 | 2.961 | 0.0 | 0.0 |
| 07 | 21.022 | 0.0 | 1.053 | 22.075 |
| 08 | 0.0 | 18.062 | 10.034 | 16.055 |
| 09 | 12.995 | 8.027 | 19.114 | 4.014 |
| 10 | 22.075 | 2.007 | 16.055 | 4.014 |
| 11 | 20.068 | 2.007 | 6.974 | 15.101 |
| 12 | 32.208 | 0.0 | 4.014 | 7.928 |
| 13 | 6.021 | 2.007 | 4.014 | 32.109 |
| 14 | 7.073 | 25.135 | 2.007 | 9.935 |
| 15 | 32.109 | 0.0 | 0.0 | 12.041 |
| 16 | 33.162 | 2.007 | 0.0 | 8.981 |
| 17 | 42.144 | 0.0 | 0.0 | 2.007 |
| 18 | 18.062 | 0.0 | 2.007 | 24.082 |
| 19 | 5.067 | 6.021 | 4.014 | 29.05 |
| 20 | 23.029 | 6.021 | 1.053 | 14.048 |
| 21 | 27.043 | 3.06 | 0.0 | 14.048 |
| 22 | 29.387 | 0.238 | 3.298 | 11.227 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.417 | -0.835 | 0.246 | -0.263 |
| 02 | 0.952 | -0.882 | -2.538 | -0.087 |
| 03 | -0.706 | -2.538 | -2.538 | 1.209 |
| 04 | -0.414 | -2.538 | -2.538 | 1.157 |
| 05 | 1.28 | -1.401 | -2.538 | -2.538 |
| 06 | 1.257 | -1.121 | -2.538 | -2.538 |
| 07 | 0.606 | -2.538 | -1.791 | 0.653 |
| 08 | -2.538 | 0.461 | -0.087 | 0.35 |
| 09 | 0.151 | -0.289 | 0.515 | -0.882 |
| 10 | 0.653 | -1.401 | 0.35 | -0.882 |
| 11 | 0.562 | -1.401 | -0.414 | 0.292 |
| 12 | 1.018 | -2.538 | -0.882 | -0.3 |
| 13 | -0.542 | -1.401 | -0.882 | 1.015 |
| 14 | -0.402 | 0.778 | -1.401 | -0.097 |
| 15 | 1.015 | -2.538 | -2.538 | 0.08 |
| 16 | 1.046 | -1.401 | -2.538 | -0.188 |
| 17 | 1.28 | -2.538 | -2.538 | -1.401 |
| 18 | 0.461 | -2.538 | -1.401 | 0.736 |
| 19 | -0.69 | -0.542 | -0.882 | 0.917 |
| 20 | 0.693 | -0.542 | -1.791 | 0.224 |
| 21 | 0.848 | -1.096 | -2.538 | 0.224 |
| 22 | 0.929 | -2.314 | -1.038 | 0.016 |