Transcription factor | Arid3a | ||||||||
Model | ARI3A_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 22 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | dWTTAAWYvRdWWYAAAWYWWW | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 44 | ||||||||
TF family | ARID-related factors {3.7.1} | ||||||||
TF subfamily | ARID3 {3.7.1.3} | ||||||||
MGI | MGI:1328360 | ||||||||
EntrezGene | GeneID:13496 (SSTAR profile) | ||||||||
UniProt ID | ARI3A_MOUSE | ||||||||
UniProt AC | Q62431 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Arid3a expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 17.247 | 4.252 | 14.385 | 8.266 |
02 | 30.103 | 4.014 | 0.0 | 10.034 |
03 | 4.968 | 0.0 | 0.0 | 39.183 |
04 | 6.974 | 0.0 | 0.0 | 37.176 |
05 | 42.144 | 2.007 | 0.0 | 0.0 |
06 | 41.19 | 2.961 | 0.0 | 0.0 |
07 | 21.022 | 0.0 | 1.053 | 22.075 |
08 | 0.0 | 18.062 | 10.034 | 16.055 |
09 | 12.995 | 8.027 | 19.114 | 4.014 |
10 | 22.075 | 2.007 | 16.055 | 4.014 |
11 | 20.068 | 2.007 | 6.974 | 15.101 |
12 | 32.208 | 0.0 | 4.014 | 7.928 |
13 | 6.021 | 2.007 | 4.014 | 32.109 |
14 | 7.073 | 25.135 | 2.007 | 9.935 |
15 | 32.109 | 0.0 | 0.0 | 12.041 |
16 | 33.162 | 2.007 | 0.0 | 8.981 |
17 | 42.144 | 0.0 | 0.0 | 2.007 |
18 | 18.062 | 0.0 | 2.007 | 24.082 |
19 | 5.067 | 6.021 | 4.014 | 29.05 |
20 | 23.029 | 6.021 | 1.053 | 14.048 |
21 | 27.043 | 3.06 | 0.0 | 14.048 |
22 | 29.387 | 0.238 | 3.298 | 11.227 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.417 | -0.835 | 0.246 | -0.263 |
02 | 0.952 | -0.882 | -2.538 | -0.087 |
03 | -0.706 | -2.538 | -2.538 | 1.209 |
04 | -0.414 | -2.538 | -2.538 | 1.157 |
05 | 1.28 | -1.401 | -2.538 | -2.538 |
06 | 1.257 | -1.121 | -2.538 | -2.538 |
07 | 0.606 | -2.538 | -1.791 | 0.653 |
08 | -2.538 | 0.461 | -0.087 | 0.35 |
09 | 0.151 | -0.289 | 0.515 | -0.882 |
10 | 0.653 | -1.401 | 0.35 | -0.882 |
11 | 0.562 | -1.401 | -0.414 | 0.292 |
12 | 1.018 | -2.538 | -0.882 | -0.3 |
13 | -0.542 | -1.401 | -0.882 | 1.015 |
14 | -0.402 | 0.778 | -1.401 | -0.097 |
15 | 1.015 | -2.538 | -2.538 | 0.08 |
16 | 1.046 | -1.401 | -2.538 | -0.188 |
17 | 1.28 | -2.538 | -2.538 | -1.401 |
18 | 0.461 | -2.538 | -1.401 | 0.736 |
19 | -0.69 | -0.542 | -0.882 | 0.917 |
20 | 0.693 | -0.542 | -1.791 | 0.224 |
21 | 0.848 | -1.096 | -2.538 | 0.224 |
22 | 0.929 | -2.314 | -1.038 | 0.016 |