Transcription factor | ARID5B (GeneCards) | ||||||||
Model | ARI5B_HUMAN.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 13 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbYKnRTATTSKd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 19 | ||||||||
TF family | ARID-related factors {3.7.1} | ||||||||
TF subfamily | ARID5 {3.7.1.5} | ||||||||
HGNC | HGNC:17362 | ||||||||
EntrezGene | GeneID:84159 (SSTAR profile) | ||||||||
UniProt ID | ARI5B_HUMAN | ||||||||
UniProt AC | Q14865 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | ARID5B expression | ||||||||
ReMap ChIP-seq dataset list | ARID5B datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 3.25 | 1.25 | 5.25 | 5.25 |
02 | 2.0 | 4.0 | 6.0 | 3.0 |
03 | 0.0 | 4.0 | 3.0 | 8.0 |
04 | 0.0 | 2.0 | 5.0 | 8.0 |
05 | 5.0 | 1.0 | 5.0 | 4.0 |
06 | 3.0 | 1.0 | 10.0 | 1.0 |
07 | 0.0 | 0.0 | 0.0 | 15.0 |
08 | 13.0 | 0.0 | 2.0 | 0.0 |
09 | 0.0 | 2.0 | 0.0 | 13.0 |
10 | 0.0 | 1.0 | 1.0 | 13.0 |
11 | 2.0 | 4.0 | 8.0 | 1.0 |
12 | 2.0 | 1.0 | 4.0 | 8.0 |
13 | 3.75 | 1.75 | 6.75 | 2.75 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.12 | -0.832 | 0.292 | 0.292 |
02 | -0.503 | 0.055 | 0.411 | -0.186 |
03 | -1.878 | 0.055 | -0.186 | 0.673 |
04 | -1.878 | -0.503 | 0.249 | 0.673 |
05 | 0.249 | -0.971 | 0.249 | 0.055 |
06 | -0.186 | -0.971 | 0.88 | -0.971 |
07 | -1.878 | -1.878 | -1.878 | 1.264 |
08 | 1.128 | -1.878 | -0.503 | -1.878 |
09 | -1.878 | -0.503 | -1.878 | 1.128 |
10 | -1.878 | -0.971 | -0.971 | 1.128 |
11 | -0.503 | 0.055 | 0.673 | -0.971 |
12 | -0.503 | -0.971 | 0.055 | 0.673 |
13 | 0.0 | -0.601 | 0.517 | -0.256 |