Model info
| Transcription factor | Arnt2 | ||||||||
| Model | ARNT2_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RnSGTGGvRSRS | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 18 | ||||||||
| TF family | PAS domain factors {1.2.5} | ||||||||
| TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
| MGI | MGI:107188 | ||||||||
| EntrezGene | GeneID:11864 (SSTAR profile) | ||||||||
| UniProt ID | ARNT2_MOUSE | ||||||||
| UniProt AC | Q61324 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Arnt2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.479 | 1.491 | 10.546 | 2.485 |
| 02 | 2.982 | 5.08 | 5.963 | 3.975 |
| 03 | 0.0 | 11.926 | 3.975 | 2.098 |
| 04 | 0.0 | 0.994 | 17.006 | 0.0 |
| 05 | 0.0 | 0.0 | 0.994 | 17.006 |
| 06 | 0.0 | 0.994 | 17.006 | 0.0 |
| 07 | 0.994 | 0.0 | 15.902 | 1.104 |
| 08 | 2.982 | 5.963 | 7.067 | 1.988 |
| 09 | 10.049 | 0.0 | 4.969 | 2.982 |
| 10 | 0.0 | 5.963 | 10.049 | 1.988 |
| 11 | 7.067 | 0.0 | 8.945 | 1.988 |
| 12 | 2.485 | 10.546 | 3.479 | 1.491 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.218 | -0.858 | 0.769 | -0.488 |
| 02 | -0.344 | 0.105 | 0.247 | -0.106 |
| 03 | -1.978 | 0.885 | -0.106 | -0.616 |
| 04 | -1.978 | -1.113 | 1.222 | -1.978 |
| 05 | -1.978 | -1.978 | -1.113 | 1.222 |
| 06 | -1.978 | -1.113 | 1.222 | -1.978 |
| 07 | -1.113 | -1.978 | 1.158 | -1.05 |
| 08 | -0.344 | 0.247 | 0.4 | -0.656 |
| 09 | 0.724 | -1.978 | 0.086 | -0.344 |
| 10 | -1.978 | 0.247 | 0.724 | -0.656 |
| 11 | 0.4 | -1.978 | 0.616 | -0.656 |
| 12 | -0.488 | 0.769 | -0.218 | -0.858 |