Transcription factor | Arnt2 | ||||||||
Model | ARNT2_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 12 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | RnSGTGGvRSRS | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 18 | ||||||||
TF family | PAS domain factors {1.2.5} | ||||||||
TF subfamily | Arnt-like factors {1.2.5.2} | ||||||||
MGI | MGI:107188 | ||||||||
EntrezGene | GeneID:11864 (SSTAR profile) | ||||||||
UniProt ID | ARNT2_MOUSE | ||||||||
UniProt AC | Q61324 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Arnt2 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 3.479 | 1.491 | 10.546 | 2.485 |
02 | 2.982 | 5.08 | 5.963 | 3.975 |
03 | 0.0 | 11.926 | 3.975 | 2.098 |
04 | 0.0 | 0.994 | 17.006 | 0.0 |
05 | 0.0 | 0.0 | 0.994 | 17.006 |
06 | 0.0 | 0.994 | 17.006 | 0.0 |
07 | 0.994 | 0.0 | 15.902 | 1.104 |
08 | 2.982 | 5.963 | 7.067 | 1.988 |
09 | 10.049 | 0.0 | 4.969 | 2.982 |
10 | 0.0 | 5.963 | 10.049 | 1.988 |
11 | 7.067 | 0.0 | 8.945 | 1.988 |
12 | 2.485 | 10.546 | 3.479 | 1.491 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.218 | -0.858 | 0.769 | -0.488 |
02 | -0.344 | 0.105 | 0.247 | -0.106 |
03 | -1.978 | 0.885 | -0.106 | -0.616 |
04 | -1.978 | -1.113 | 1.222 | -1.978 |
05 | -1.978 | -1.978 | -1.113 | 1.222 |
06 | -1.978 | -1.113 | 1.222 | -1.978 |
07 | -1.113 | -1.978 | 1.158 | -1.05 |
08 | -0.344 | 0.247 | 0.4 | -0.656 |
09 | 0.724 | -1.978 | 0.086 | -0.344 |
10 | -1.978 | 0.247 | 0.724 | -0.656 |
11 | 0.4 | -1.978 | 0.616 | -0.656 |
12 | -0.488 | 0.769 | -0.218 | -0.858 |