We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorARNT
(GeneCards)
ModelARNT_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusnbnvdRCGTGMb
Best auROC (human)0.952
Best auROC (mouse)
Peak sets in benchmark (human)8
Peak sets in benchmark (mouse)
Aligned words512
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:700
EntrezGeneGeneID:405
(SSTAR profile)
UniProt IDARNT_HUMAN
UniProt ACP27540
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.989369999999999
0.0005 6.6414349999999995
0.0001 10.746725
GTEx tissue expression atlas ARNT expression
ReMap ChIP-seq dataset list ARNT datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0113.013.038.016.016.021.038.037.027.029.084.040.06.012.092.018.0
0213.011.023.015.023.013.018.021.046.082.068.056.013.06.082.010.0
0321.019.039.016.014.044.033.021.040.068.071.012.010.011.070.011.0
0423.09.031.022.016.010.09.0107.023.014.065.0111.015.05.09.031.0
0556.00.018.03.026.04.07.01.099.06.08.01.0180.09.077.05.0
066.0348.01.06.00.017.00.02.00.0108.00.02.00.010.00.00.0
070.00.06.00.02.01.0480.00.00.00.01.00.00.00.010.00.0
080.00.00.02.00.00.00.01.00.00.00.0497.00.00.00.00.0
090.00.00.00.00.00.00.00.00.00.00.00.00.01.0498.01.0
100.00.00.00.00.00.00.01.0172.0254.019.053.01.00.00.00.0
118.0116.032.017.063.084.038.069.04.02.011.02.03.016.023.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.86-0.860.193-0.658-0.658-0.3920.1930.167-0.144-0.0740.9810.244-1.6-0.9381.072-0.543
02-0.86-1.022-0.302-0.721-0.302-0.86-0.543-0.3920.3830.9570.7710.578-0.86-1.60.957-1.114
03-0.392-0.490.219-0.658-0.7880.3390.054-0.3920.2440.7710.814-0.938-1.114-1.0220.8-1.022
04-0.302-1.215-0.008-0.346-0.658-1.114-1.2151.222-0.302-0.7880.7261.259-0.721-1.77-1.215-0.008
050.578-4.4-0.543-2.234-0.181-1.975-1.454-3.1261.145-1.6-1.328-3.1261.741-1.2150.894-1.77
06-1.62.399-3.126-1.6-4.4-0.599-4.4-2.584-4.41.231-4.4-2.584-4.4-1.114-4.4-4.4
07-4.4-4.4-1.6-4.4-2.584-3.1262.72-4.4-4.4-4.4-3.126-4.4-4.4-4.4-1.114-4.4
08-4.4-4.4-4.4-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.42.755-4.4-4.4-4.4-4.4
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1262.757-3.126
10-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.1261.6952.084-0.490.523-3.126-4.4-4.4-4.4
11-1.3281.3030.023-0.5990.6950.9810.1930.785-1.975-2.584-1.022-2.584-2.234-0.658-0.302-0.938