We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorARNT
(GeneCards)
ModelARNT_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
0
ConsensusvdRCGTGMh
Best auROC (human)0.936
Best auROC (mouse)
Peak sets in benchmark (human)8
Peak sets in benchmark (mouse)
Aligned words500
TF familyPAS domain factors {1.2.5}
TF subfamilyArnt-like factors {1.2.5.2}
HGNCHGNC:700
EntrezGeneGeneID:405
(SSTAR profile)
UniProt IDARNT_HUMAN
UniProt ACP27540
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.084425
0.0005 3.7737999999999996
0.0001 5.68522
GTEx tissue expression atlas ARNT expression
ReMap ChIP-seq dataset list ARNT datasets
Motifs in JASPAR
PCM
ACGT
0176.0142.0215.067.0
0269.037.0121.0273.0
03351.015.0123.011.0
045.0474.01.020.0
053.01.0495.01.0
060.00.01.0499.0
070.03.0496.01.0
08178.0263.012.047.0
0977.0251.072.0100.0
PWM
ACGT
01-0.490.1260.537-0.613
02-0.584-1.189-0.0320.774
031.025-2.034-0.016-2.311
04-2.9611.324-3.903-1.77
05-3.325-3.9031.367-3.903
06-4.4-4.4-3.9031.375
07-4.4-3.3251.369-3.903
080.350.737-2.234-0.958
09-0.4770.691-0.543-0.22