Model info
| Transcription factor | ARX (GeneCards) | ||||||||
| Model | ARX_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hTAATYTAATTWv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 623 | ||||||||
| TF family | Paired-related HD factors {3.1.3} | ||||||||
| TF subfamily | ARX {3.1.3.3} | ||||||||
| HGNC | HGNC:18060 | ||||||||
| EntrezGene | GeneID:170302 (SSTAR profile) | ||||||||
| UniProt ID | ARX_HUMAN | ||||||||
| UniProt AC | Q96QS3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ARX expression | ||||||||
| ReMap ChIP-seq dataset list | ARX datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 96.228 | 175.382 | 96.213 | 255.178 |
| 02 | 37.205 | 35.862 | 35.191 | 514.742 |
| 03 | 601.208 | 3.021 | 10.392 | 8.378 |
| 04 | 606.076 | 2.518 | 11.217 | 3.189 |
| 05 | 2.518 | 49.429 | 3.861 | 567.193 |
| 06 | 0.168 | 253.044 | 16.252 | 353.536 |
| 07 | 0.168 | 161.088 | 0.839 | 460.905 |
| 08 | 586.94 | 0.839 | 34.381 | 0.839 |
| 09 | 621.154 | 0.168 | 0.168 | 1.511 |
| 10 | 0.504 | 0.504 | 0.504 | 621.489 |
| 11 | 10.728 | 0.671 | 0.671 | 610.929 |
| 12 | 464.698 | 51.425 | 52.096 | 54.782 |
| 13 | 194.988 | 103.748 | 230.573 | 93.691 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.475 | 0.118 | -0.475 | 0.49 |
| 02 | -1.4 | -1.435 | -1.453 | 1.188 |
| 03 | 1.343 | -3.526 | -2.574 | -2.757 |
| 04 | 1.351 | -3.641 | -2.507 | -3.49 |
| 05 | -3.641 | -1.126 | -3.359 | 1.285 |
| 06 | -4.484 | 0.481 | -2.176 | 0.814 |
| 07 | -4.484 | 0.033 | -4.163 | 1.078 |
| 08 | 1.319 | -4.163 | -1.475 | -4.163 |
| 09 | 1.376 | -4.484 | -4.484 | -3.921 |
| 10 | -4.311 | -4.311 | -4.311 | 1.376 |
| 11 | -2.546 | -4.234 | -4.234 | 1.359 |
| 12 | 1.086 | -1.088 | -1.075 | -1.026 |
| 13 | 0.223 | -0.401 | 0.389 | -0.502 |