We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorASCL1
(GeneCards)
ModelASCL1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusnvhvCACCTGSYnbhn
Best auROC (human)0.99
Best auROC (mouse)0.983
Peak sets in benchmark (human)30
Peak sets in benchmark (mouse)25
Aligned words534
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyAchaete-Scute-like factors {1.2.2.2}
HGNCHGNC:738
EntrezGeneGeneID:429
(SSTAR profile)
UniProt IDASCL1_HUMAN
UniProt ACP50553
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.00641
0.0005 6.59271
0.0001 14.080110000000001
GTEx tissue expression atlas ASCL1 expression
ReMap ChIP-seq dataset list ASCL1 datasets
Motifs in JASPAR
MA1100.1 (ASCL1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0125.021.025.07.016.088.014.026.019.066.035.012.012.047.055.016.0
0223.028.07.014.061.040.013.0108.028.046.020.035.012.011.018.020.0
0333.013.068.010.059.022.020.024.08.035.014.01.011.017.0137.012.0
040.0111.00.00.00.087.00.00.00.0238.00.01.00.047.00.00.0
050.00.00.00.0483.00.00.00.00.00.00.00.01.00.00.00.0
060.0365.0119.00.00.00.00.00.00.00.00.00.00.00.00.00.0
070.00.00.00.00.0365.00.00.02.0117.00.00.00.00.00.00.0
080.00.00.02.00.00.00.0482.00.00.00.00.00.00.00.00.0
090.00.00.00.00.00.00.00.00.00.00.00.00.00.0483.01.0
100.00.00.00.00.00.00.00.00.0372.055.056.00.00.01.00.0
110.00.00.00.021.0189.08.0154.04.047.00.05.03.037.01.015.0
129.09.04.06.086.069.018.0100.00.01.03.05.013.069.065.027.0
137.054.026.021.022.065.014.047.02.057.018.013.08.065.036.029.0
145.019.07.08.050.083.012.096.05.040.021.028.04.049.023.034.0
156.014.031.013.044.075.012.060.09.026.014.014.012.054.062.038.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.188-0.359-0.188-1.423-0.6261.06-0.756-0.149-0.4580.7730.144-0.906-0.9060.4360.592-0.626
02-0.27-0.076-1.423-0.7560.6950.276-0.8281.264-0.0760.415-0.4070.144-0.906-0.99-0.511-0.407
030.086-0.8280.803-1.0820.662-0.314-0.407-0.228-1.2960.144-0.756-3.095-0.99-0.5671.501-0.906
04-4.3731.291-4.373-4.373-4.3731.048-4.373-4.373-4.3732.052-4.373-3.095-4.3730.436-4.373-4.373
05-4.373-4.373-4.373-4.3732.759-4.373-4.373-4.373-4.373-4.373-4.373-4.373-3.095-4.373-4.373-4.373
06-4.3732.4791.36-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373
07-4.373-4.373-4.373-4.373-4.3732.479-4.373-4.373-2.5521.343-4.373-4.373-4.373-4.373-4.373-4.373
08-4.373-4.373-4.373-2.552-4.373-4.373-4.3732.757-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373
09-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.3732.759-3.095
10-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.373-4.3732.4980.5920.61-4.373-4.373-3.095-4.373
11-4.373-4.373-4.373-4.373-0.3591.822-1.2961.617-1.9440.436-4.373-1.738-2.2020.199-3.095-0.689
12-1.183-1.183-1.944-1.5681.0370.818-0.5111.187-4.373-3.095-2.202-1.738-0.8280.8180.758-0.112
13-1.4230.574-0.149-0.359-0.3140.758-0.7560.436-2.5520.628-0.511-0.828-1.2960.7580.172-0.042
14-1.738-0.458-1.423-1.2960.4981.001-0.9061.146-1.7380.276-0.359-0.076-1.9440.477-0.270.115
15-1.568-0.7560.024-0.8280.3710.9-0.9060.679-1.183-0.149-0.756-0.756-0.9060.5740.7110.226