We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorASCL1
(GeneCards)
ModelASCL1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensushnvCASCTGYYbhh
Best auROC (human)0.985
Best auROC (mouse)0.98
Peak sets in benchmark (human)30
Peak sets in benchmark (mouse)25
Aligned words480
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyAchaete-Scute-like factors {1.2.2.2}
HGNCHGNC:738
EntrezGeneGeneID:429
(SSTAR profile)
UniProt IDASCL1_HUMAN
UniProt ACP50553
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.95131
0.0005 4.99941
0.0001 7.40671
GTEx tissue expression atlas ASCL1 expression
ReMap ChIP-seq dataset list ASCL1 datasets
Motifs in JASPAR
MA1100.1 (ASCL1; Homo sapiens)
PCM
ACGT
0191.0210.084.095.0
02105.0118.077.0180.0
03106.0122.0205.047.0
043.0471.02.04.0
05471.02.00.07.0
063.0295.0172.010.0
074.0470.01.05.0
084.01.01.0474.0
092.02.0469.07.0
104.0375.040.061.0
1139.0202.03.0236.0
1249.0185.0132.0114.0
1363.0236.047.0134.0
1480.0195.073.0132.0
PWM
ACGT
01-0.2730.554-0.351-0.23
02-0.132-0.017-0.4370.401
03-0.1220.0160.53-0.918
04-3.2871.358-3.535-3.088
051.358-3.535-4.366-2.655
06-3.2870.8920.356-2.354
07-3.0881.356-3.867-2.922
08-3.088-3.867-3.8671.364
09-3.535-3.5351.354-2.655
10-3.0881.131-1.074-0.664
11-1.0980.516-3.2870.67
12-0.8770.4280.094-0.051
13-0.6330.67-0.9180.109
14-0.3990.481-0.4890.094