Model info
| Transcription factor | ASCL1 (GeneCards) | ||||||||
| Model | ASCL1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hnvCASCTGYYbhh | ||||||||
| Best auROC (human) | 0.985 | ||||||||
| Best auROC (mouse) | 0.98 | ||||||||
| Peak sets in benchmark (human) | 30 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 480 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Achaete-Scute-like factors {1.2.2.2} | ||||||||
| HGNC | HGNC:738 | ||||||||
| EntrezGene | GeneID:429 (SSTAR profile) | ||||||||
| UniProt ID | ASCL1_HUMAN | ||||||||
| UniProt AC | P50553 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ASCL1 expression | ||||||||
| ReMap ChIP-seq dataset list | ASCL1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 91.0 | 210.0 | 84.0 | 95.0 |
| 02 | 105.0 | 118.0 | 77.0 | 180.0 |
| 03 | 106.0 | 122.0 | 205.0 | 47.0 |
| 04 | 3.0 | 471.0 | 2.0 | 4.0 |
| 05 | 471.0 | 2.0 | 0.0 | 7.0 |
| 06 | 3.0 | 295.0 | 172.0 | 10.0 |
| 07 | 4.0 | 470.0 | 1.0 | 5.0 |
| 08 | 4.0 | 1.0 | 1.0 | 474.0 |
| 09 | 2.0 | 2.0 | 469.0 | 7.0 |
| 10 | 4.0 | 375.0 | 40.0 | 61.0 |
| 11 | 39.0 | 202.0 | 3.0 | 236.0 |
| 12 | 49.0 | 185.0 | 132.0 | 114.0 |
| 13 | 63.0 | 236.0 | 47.0 | 134.0 |
| 14 | 80.0 | 195.0 | 73.0 | 132.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.273 | 0.554 | -0.351 | -0.23 |
| 02 | -0.132 | -0.017 | -0.437 | 0.401 |
| 03 | -0.122 | 0.016 | 0.53 | -0.918 |
| 04 | -3.287 | 1.358 | -3.535 | -3.088 |
| 05 | 1.358 | -3.535 | -4.366 | -2.655 |
| 06 | -3.287 | 0.892 | 0.356 | -2.354 |
| 07 | -3.088 | 1.356 | -3.867 | -2.922 |
| 08 | -3.088 | -3.867 | -3.867 | 1.364 |
| 09 | -3.535 | -3.535 | 1.354 | -2.655 |
| 10 | -3.088 | 1.131 | -1.074 | -0.664 |
| 11 | -1.098 | 0.516 | -3.287 | 0.67 |
| 12 | -0.877 | 0.428 | 0.094 | -0.051 |
| 13 | -0.633 | 0.67 | -0.918 | 0.109 |
| 14 | -0.399 | 0.481 | -0.489 | 0.094 |