We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorATF1
(GeneCards)
ModelATF1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusndRTGACGYvd
Best auROC (human)0.892
Best auROC (mouse)
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)
Aligned words500
TF familyCREB-related factors {1.1.7}
TF subfamilyCREB-like factors {1.1.7.1}
HGNCHGNC:783
EntrezGeneGeneID:466
(SSTAR profile)
UniProt IDATF1_HUMAN
UniProt ACP18846
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.35877
0.0005 5.04232
0.0001 6.300285
GTEx tissue expression atlas ATF1 expression
ReMap ChIP-seq dataset list ATF1 datasets
Motifs in JASPAR
PCM
ACGT
01144.0180.079.097.0
02179.057.0181.083.0
03176.053.0255.016.0
049.03.016.0472.0
0510.05.0476.09.0
06473.05.08.014.0
0716.0415.027.042.0
0812.08.0438.042.0
0939.0159.08.0294.0
10144.0233.072.051.0
11268.057.093.082.0
PWM
ACGT
010.140.361-0.452-0.25
020.355-0.7710.366-0.403
030.339-0.8410.707-1.975
04-2.484-3.325-1.9751.32
05-2.394-2.9611.328-2.484
061.322-2.961-2.584-2.096
07-1.9751.191-1.489-1.067
08-2.234-2.5841.245-1.067
09-1.1380.238-2.5840.848
100.140.617-0.543-0.879
110.756-0.771-0.291-0.415