Model info
| Transcription factor | ATF1 (GeneCards) | ||||||||
| Model | ATF1_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ndRTGACGYvd | ||||||||
| Best auROC (human) | 0.892 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | CREB-related factors {1.1.7} | ||||||||
| TF subfamily | CREB-like factors {1.1.7.1} | ||||||||
| HGNC | HGNC:783 | ||||||||
| EntrezGene | GeneID:466 (SSTAR profile) | ||||||||
| UniProt ID | ATF1_HUMAN | ||||||||
| UniProt AC | P18846 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ATF1 expression | ||||||||
| ReMap ChIP-seq dataset list | ATF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 144.0 | 180.0 | 79.0 | 97.0 |
| 02 | 179.0 | 57.0 | 181.0 | 83.0 |
| 03 | 176.0 | 53.0 | 255.0 | 16.0 |
| 04 | 9.0 | 3.0 | 16.0 | 472.0 |
| 05 | 10.0 | 5.0 | 476.0 | 9.0 |
| 06 | 473.0 | 5.0 | 8.0 | 14.0 |
| 07 | 16.0 | 415.0 | 27.0 | 42.0 |
| 08 | 12.0 | 8.0 | 438.0 | 42.0 |
| 09 | 39.0 | 159.0 | 8.0 | 294.0 |
| 10 | 144.0 | 233.0 | 72.0 | 51.0 |
| 11 | 268.0 | 57.0 | 93.0 | 82.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.14 | 0.361 | -0.452 | -0.25 |
| 02 | 0.355 | -0.771 | 0.366 | -0.403 |
| 03 | 0.339 | -0.841 | 0.707 | -1.975 |
| 04 | -2.484 | -3.325 | -1.975 | 1.32 |
| 05 | -2.394 | -2.961 | 1.328 | -2.484 |
| 06 | 1.322 | -2.961 | -2.584 | -2.096 |
| 07 | -1.975 | 1.191 | -1.489 | -1.067 |
| 08 | -2.234 | -2.584 | 1.245 | -1.067 |
| 09 | -1.138 | 0.238 | -2.584 | 0.848 |
| 10 | 0.14 | 0.617 | -0.543 | -0.879 |
| 11 | 0.756 | -0.771 | -0.291 | -0.415 |