Model info
| Transcription factor | Atf1 | ||||||||
| Model | ATF1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nTGACGTSMv | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 43 | ||||||||
| TF family | CREB-related factors {1.1.7} | ||||||||
| TF subfamily | CREB-like factors {1.1.7.1} | ||||||||
| MGI | MGI:1298366 | ||||||||
| EntrezGene | GeneID:11908 (SSTAR profile) | ||||||||
| UniProt ID | ATF1_MOUSE | ||||||||
| UniProt AC | P81269 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Atf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.338 | 11.497 | 11.497 | 0.419 |
| 02 | 0.0 | 0.0 | 0.0 | 33.751 |
| 03 | 0.0 | 0.0 | 33.751 | 0.0 |
| 04 | 33.751 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 32.721 | 1.031 | 0.0 |
| 06 | 1.031 | 0.0 | 32.721 | 0.0 |
| 07 | 0.644 | 2.383 | 0.0 | 30.724 |
| 08 | 2.77 | 19.001 | 8.889 | 3.092 |
| 09 | 25.056 | 5.282 | 2.126 | 1.288 |
| 10 | 6.538 | 13.236 | 10.016 | 3.961 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.186 | 0.284 | 0.284 | -1.971 |
| 02 | -2.36 | -2.36 | -2.36 | 1.313 |
| 03 | -2.36 | -2.36 | 1.313 | -2.36 |
| 04 | 1.313 | -2.36 | -2.36 | -2.36 |
| 05 | -2.36 | 1.283 | -1.585 | -2.36 |
| 06 | -1.585 | -2.36 | 1.283 | -2.36 |
| 07 | -1.811 | -1.049 | -2.36 | 1.221 |
| 08 | -0.937 | 0.758 | 0.047 | -0.853 |
| 09 | 1.024 | -0.414 | -1.132 | -1.458 |
| 10 | -0.228 | 0.415 | 0.156 | -0.655 |