We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorAtf1
ModelATF1_MOUSE.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
B
Motif rank
0
ConsensusnTGACGTSMv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words43
TF familyCREB-related factors {1.1.7}
TF subfamilyCREB-like factors {1.1.7.1}
MGIMGI:1298366
EntrezGeneGeneID:11908
(SSTAR profile)
UniProt IDATF1_MOUSE
UniProt ACP81269
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.79049
0.0005 4.70336
0.0001 6.274559999999999
GTEx tissue expression atlas Atf1 expression
Motifs in JASPAR
MA0604.1 (Atf1; Mus musculus)
PCM
ACGT
0110.33811.49711.4970.419
020.00.00.033.751
030.00.033.7510.0
0433.7510.00.00.0
050.032.7211.0310.0
061.0310.032.7210.0
070.6442.3830.030.724
082.7719.0018.8893.092
0925.0565.2822.1261.288
106.53813.23610.0163.961
PWM
ACGT
010.1860.2840.284-1.971
02-2.36-2.36-2.361.313
03-2.36-2.361.313-2.36
041.313-2.36-2.36-2.36
05-2.361.283-1.585-2.36
06-1.585-2.361.283-2.36
07-1.811-1.049-2.361.221
08-0.9370.7580.047-0.853
091.024-0.414-1.132-1.458
10-0.2280.4150.156-0.655