Model info
| Transcription factor | ATF2 (GeneCards) | ||||||||
| Model | ATF2_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvTGAbGWMAb | ||||||||
| Best auROC (human) | 0.751 | ||||||||
| Best auROC (mouse) | 0.849 | ||||||||
| Peak sets in benchmark (human) | 8 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | Jun-related factors {1.1.1} | ||||||||
| TF subfamily | ATF-2-like factors {1.1.1.3} | ||||||||
| HGNC | HGNC:784 | ||||||||
| EntrezGene | GeneID:1386 (SSTAR profile) | ||||||||
| UniProt ID | ATF2_HUMAN | ||||||||
| UniProt AC | P15336 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ATF2 expression | ||||||||
| ReMap ChIP-seq dataset list | ATF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 158.0 | 44.0 | 232.0 | 66.0 |
| 02 | 212.0 | 83.0 | 192.0 | 13.0 |
| 03 | 10.0 | 12.0 | 6.0 | 472.0 |
| 04 | 8.0 | 7.0 | 470.0 | 15.0 |
| 05 | 452.0 | 6.0 | 7.0 | 35.0 |
| 06 | 17.0 | 181.0 | 124.0 | 178.0 |
| 07 | 1.0 | 21.0 | 467.0 | 11.0 |
| 08 | 63.0 | 36.0 | 13.0 | 388.0 |
| 09 | 79.0 | 388.0 | 18.0 | 15.0 |
| 10 | 438.0 | 9.0 | 32.0 | 21.0 |
| 11 | 31.0 | 127.0 | 92.0 | 250.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.232 | -1.022 | 0.613 | -0.628 |
| 02 | 0.523 | -0.403 | 0.425 | -2.163 |
| 03 | -2.394 | -2.234 | -2.819 | 1.32 |
| 04 | -2.584 | -2.694 | 1.315 | -2.034 |
| 05 | 1.276 | -2.819 | -2.694 | -1.242 |
| 06 | -1.92 | 0.366 | -0.008 | 0.35 |
| 07 | -3.903 | -1.725 | 1.309 | -2.311 |
| 08 | -0.673 | -1.215 | -2.163 | 1.124 |
| 09 | -0.452 | 1.124 | -1.868 | -2.034 |
| 10 | 1.245 | -2.484 | -1.328 | -1.725 |
| 11 | -1.358 | 0.016 | -0.302 | 0.687 |