Model info
| Transcription factor | ATF2 (GeneCards) | ||||||||
| Model | ATF2_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | ddddRATGATGTCAThdhdd | ||||||||
| Best auROC (human) | 0.705 | ||||||||
| Best auROC (mouse) | 0.806 | ||||||||
| Peak sets in benchmark (human) | 8 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 1294 | ||||||||
| TF family | Jun-related factors {1.1.1} | ||||||||
| TF subfamily | ATF-2-like factors {1.1.1.3} | ||||||||
| HGNC | HGNC:784 | ||||||||
| EntrezGene | GeneID:1386 (SSTAR profile) | ||||||||
| UniProt ID | ATF2_HUMAN | ||||||||
| UniProt AC | P15336 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | ATF2 expression | ||||||||
| ReMap ChIP-seq dataset list | ATF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 507.0 | 154.0 | 175.0 | 457.0 |
| 02 | 481.0 | 135.0 | 277.0 | 400.0 |
| 03 | 535.0 | 131.0 | 273.0 | 354.0 |
| 04 | 331.0 | 158.0 | 242.0 | 562.0 |
| 05 | 363.0 | 93.0 | 732.0 | 105.0 |
| 06 | 1179.0 | 1.0 | 110.0 | 3.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1293.0 |
| 08 | 0.0 | 0.0 | 1292.0 | 1.0 |
| 09 | 1293.0 | 0.0 | 0.0 | 0.0 |
| 10 | 0.0 | 176.0 | 44.0 | 1073.0 |
| 11 | 1.0 | 0.0 | 1292.0 | 0.0 |
| 12 | 0.0 | 0.0 | 0.0 | 1293.0 |
| 13 | 40.0 | 1251.0 | 0.0 | 2.0 |
| 14 | 1293.0 | 0.0 | 0.0 | 0.0 |
| 15 | 0.0 | 65.0 | 10.0 | 1218.0 |
| 16 | 168.0 | 669.0 | 129.0 | 327.0 |
| 17 | 555.0 | 198.0 | 201.0 | 339.0 |
| 18 | 336.0 | 211.0 | 182.0 | 564.0 |
| 19 | 284.0 | 181.0 | 185.0 | 643.0 |
| 20 | 403.0 | 177.0 | 205.0 | 508.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.448 | -0.735 | -0.609 | 0.345 |
| 02 | 0.396 | -0.865 | -0.153 | 0.212 |
| 03 | 0.502 | -0.895 | -0.168 | 0.09 |
| 04 | 0.024 | -0.71 | -0.288 | 0.551 |
| 05 | 0.115 | -1.232 | 0.814 | -1.113 |
| 06 | 1.29 | -4.757 | -1.067 | -4.217 |
| 07 | -5.201 | -5.201 | -5.201 | 1.382 |
| 08 | -5.201 | -5.201 | 1.381 | -4.757 |
| 09 | 1.382 | -5.201 | -5.201 | -5.201 |
| 10 | -5.201 | -0.603 | -1.96 | 1.196 |
| 11 | -4.757 | -5.201 | 1.381 | -5.201 |
| 12 | -5.201 | -5.201 | -5.201 | 1.382 |
| 13 | -2.051 | 1.349 | -5.201 | -4.451 |
| 14 | 1.382 | -5.201 | -5.201 | -5.201 |
| 15 | -5.201 | -1.582 | -3.317 | 1.322 |
| 16 | -0.649 | 0.725 | -0.91 | 0.011 |
| 17 | 0.538 | -0.487 | -0.472 | 0.047 |
| 18 | 0.038 | -0.424 | -0.57 | 0.554 |
| 19 | -0.129 | -0.576 | -0.554 | 0.685 |
| 20 | 0.219 | -0.598 | -0.452 | 0.45 |